Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna27998.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 406 Molecular Weight: 44909.4 Isoelectric Point: 7.2072 |
Chromosome | Chromosome/Scaffold: 6 Start: 37474639 End: 37476111 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 119 | 324 | 0 |
IQDEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHIANGPCITIHHVTNIIIHGIHIHDCKQAGNGDIRDSPSHAGWWTQSDGDGVSIFGGKHVWVD HCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSFTEDKGMHVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSAAPTIYSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 406 Download |
MEIQLSMSVL FLASFLIATT SVSCSQLQDP EVVVQEVHRN ISASRRQLAH SSCGNGNPID 60 DCWRCDPNWE QNRQRLADCA IGFGKDAIGG RNGRIYVVSD SGDDDPVNPR PGTIRHAVIQ 120 DEPLWIIFKR DMVIQLKQEL VMNSFKTIDG RGASVHIANG PCITIHHVTN IIIHGIHIHD 180 CKQAGNGDIR DSPSHAGWWT QSDGDGVSIF GGKHVWVDHC SLSNCHDGLI DAIHGSTAIT 240 ISNNYMTHHD KVMLLGHSDS FTEDKGMHVT IAFNHFGEGL VQRMPRCRLG YFHVVNNDYT 300 HWEMYAIGGS AAPTIYSQGN RFLAPDRRFD KEVTKHEDAP ESKWRKWNWR SEGDLMLNGA 360 FFRQSGAGSW SSYARASSLS GRPSSLVGSM TVTAGALNCR RGSRC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 2.0e-27 | 182 | 322 | 154 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 2.0e-69 | 137 | 322 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 1.0e-70 | 131 | 326 | 207 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 57 | 366 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 57 | 366 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-18 | 126 | 323 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 5e-17 | 186 | 334 | 177 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 1vbl_A | 1e-16 | 135 | 322 | 119 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |