| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna28048.1-v1.0-hybrid |
| Family | CBM57 |
| Protein Properties | Length: 494 Molecular Weight: 54445.5 Isoelectric Point: 4.6005 |
| Chromosome | Chromosome/Scaffold: 3 Start: 19779935 End: 19788939 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 42 | 202 | 4.5e-24 |
| MINCGGPQTKISNGTVYEQDSEPLGTATYYVTETNRWGVSNVGLKTQLTARISASSLRYYGLGLENGNYTVKLEFAEQAILDESTRKSHGRRVFDIYIQD VLVAKDFDIRNETNRTSLVAIEMVYNAQVVSENYLEIHFFWAGKGTCCIPEEGTYGPLISA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MECFLAAAVV LDLKNGGLPS GLNCLQRGFP CHRDSPVYYN FMINCGGPQT KISNGTVYEQ 60 DSEPLGTATY YVTETNRWGV SNVGLKTQLT ARISASSLRY YGLGLENGNY TVKLEFAEQA 120 ILDESTRKSH GRRVFDIYIQ DVLVAKDFDI RNETNRTSLV AIEMVYNAQV VSENYLEIHF 180 FWAGKGTCCI PEEGTYGPLI SAISATPEFK PTVSNKLPST KKNRTGMIVG IVVSGGVLIL 240 LVLLFYIVQI RKRHNSDDDY DEAACSIFIS GFDVQAQPTT DPSEVRALNA IFQKWNITNK 300 VKQWNTTGDP CSGIAIDEDD DTSYFYDATN YNPKASILDI VAPIPEELYT LTFLQYLDVK 360 KNYLTGPISA SIGNLSSVTY LNLGHNDLSG EFPKDIVKLN NLTYLNLGHN DLSGELPKDI 420 VKLNNLTYLA LGTLDLSGSL PPEIGFIDNS GLSGEIPPTF ANLTNLEQFW ATDTNLTGRL 480 PDFVGNWTKL TTL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 5.0e-23 | 343 | 493 | 159 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 4.0e-23 | 344 | 490 | 158 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 3.0e-24 | 340 | 493 | 163 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 5.0e-25 | 344 | 484 | 149 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 1.0e-52 | 39 | 203 | 170 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ogq_A | 5e-16 | 281 | 463 | 4 | 197 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 1ogq_A | 0.002 | 444 | 493 | 83 | 130 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rgz_A | 0.00000000002 | 354 | 454 | 634 | 742 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rgz_A | 0.00000000007 | 332 | 493 | 391 | 543 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
