Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna29267.1-v1.0-hybrid |
Family | GH19 |
Protein Properties | Length: 505 Molecular Weight: 55977.9 Isoelectric Point: 8.3879 |
Chromosome | Chromosome/Scaffold: 5 Start: 18939272 End: 18944184 |
Description | Chitinase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 36 | 244 | 0 |
PALINEKLYNNLFLHKDDTACPANNFYTYSSFIRATKYFPRFGTTGSLATRKREIAAFLAQISHETTGGWATAPDGPYSWGLCFKEEVNPGSNYCDDTNK EWPCYPGKSYKGRGPIQLSWNYNYGQAGKALGFDGLKNPEVVANSSLIAFKTALWFWMTEQKPKPSCHDVMVGRYVLTQADIAANRTVGFGMVTNIINGG LECGIGNDA |
Full Sequence |
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Protein Sequence Length: 505 Download |
MAAVSLPSSS SVFSFFLTTI FLLSISSWEV EAHPVPALIN EKLYNNLFLH KDDTACPANN 60 FYTYSSFIRA TKYFPRFGTT GSLATRKREI AAFLAQISHE TTGGWATAPD GPYSWGLCFK 120 EEVNPGSNYC DDTNKEWPCY PGKSYKGRGP IQLSWNYNYG QAGKALGFDG LKNPEVVANS 180 SLIAFKTALW FWMTEQKPKP SCHDVMVGRY VLTQADIAAN RTVGFGMVTN IINGGLECGI 240 GNDARGGGSM FKQSGYSGIS RVPIQTILGY RLGILKKVQA IDQQCCGFYV HGGVGPSSKA 300 RGGGWELWQV SFHSWYTDTL REFDLSAAKY IIGSVLASFG VAYVCDTTVS DKKIFGGTTP 360 GTVSNKGWWE ETDKKFQAWP RTAGPPVVMN PIKLARQSKC KVLIHHGVAL VEGCLTKLPK 420 IPYEHQVQEE LCFLPVIPLP DAPEQQDYVL RKFIKTPGYI VVNYEDEESI HDFDIFGKLA 480 NNQELFSKKL PLFDKRSHSL LNFR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3179 | COG3179 | 2.0e-7 | 67 | 236 | 195 | + Predicted chitinase [General function prediction only] | ||
cd00442 | lysozyme_like | 2.0e-11 | 91 | 201 | 111 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam06592 | DUF1138 | 1.0e-34 | 328 | 398 | 71 | + Protein of unknown function (DUF1138). This family consists of several hypothetical short plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown. | ||
pfam00182 | Glyco_hydro_19 | 1.0e-111 | 38 | 245 | 208 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 3.0e-120 | 39 | 245 | 207 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3cql_B | 0 | 38 | 241 | 5 | 207 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3cql_A | 0 | 38 | 241 | 5 | 207 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dyg_B | 0 | 35 | 245 | 3 | 212 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dyg_A | 0 | 35 | 245 | 3 | 212 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dwx_B | 0 | 35 | 245 | 3 | 212 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |