| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna29291.1-v1.0-hybrid |
| Family | PL1 |
| Protein Properties | Length: 380 Molecular Weight: 42304.5 Isoelectric Point: 9.4951 |
| Chromosome | Chromosome/Scaffold: 5 Start: 19079133 End: 19080462 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 104 | 302 | 0 |
| DKKWITFQRDMKIKLEKPLLISSFTAIDGRGVNVHIAGNACLRVFKATNVIIHGLRIHHCKSQPPSTVMGPDGIVSLGGVDGDAIRLVTASKVWIDHNTL YECEDGLLDVTRGSTNVTISNNWFRDQDKVMLLGHDDGFFRDKNMKRQVLFPKHKGSQCFRIRHGYAHVVNNLYKEWTLYAIGGSMNPSVKSEANLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 380 Download |
| MASQYCFVLV NAIILLCSLC PNLSSAKETK VLGLKMNAID GCWRWNPNWR SNRQQLAMCS 60 VGFAGKMSNN IGKDVVNYEV TDPSDNALNP QPGTLRYGAT MIKDKKWITF QRDMKIKLEK 120 PLLISSFTAI DGRGVNVHIA GNACLRVFKA TNVIIHGLRI HHCKSQPPST VMGPDGIVSL 180 GGVDGDAIRL VTASKVWIDH NTLYECEDGL LDVTRGSTNV TISNNWFRDQ DKVMLLGHDD 240 GFFRDKNMKR QVLFPKHKGS QCFRIRHGYA HVVNNLYKEW TLYAIGGSMN PSVKSEANLF 300 IASQQNKEVT WRKDIVSDSW KFYSKGDIFE NGASFVQTGQ GGAEPLYNKE QNFQVVDAKS 360 VRPLTRASGA LTCTKQSRC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-18 | 124 | 300 | 194 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-44 | 126 | 300 | 185 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-55 | 113 | 303 | 204 | + Amb_all domain. | ||
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 37 | 372 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 37 | 372 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmw_A | 0.0000000002 | 129 | 300 | 82 | 246 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmv_A | 0.0000000002 | 129 | 300 | 82 | 246 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
| PDB | 1vbl_A | 0.0000000002 | 122 | 300 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
