| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna29636.1-v1.0-hybrid |
| Family | GH33 |
| Protein Properties | Length: 325 Molecular Weight: 36329.1 Isoelectric Point: 4.6319 |
| Chromosome | Chromosome/Scaffold: 4 Start: 8785852 End: 8789105 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH33 | 25 | 317 | 6.4e-28 |
| FAANSVPFNSCHASTIVEVDIDHFLVAYFGGSSEGAPDVKIWLQTYKNGYWQPPEVADEQPDVPMWNPVLFKLSSGELLLFYKIGQEVQKWSGCLKRSYD KGVTWTKREQLPPGILGPIKNKPILLENGDLLCGSSVESWNSWGAWVEVATDSVRSWRKYGPIYIENETLSVIQPVPYQTAKGTLRLLMRSFDHIGRVCI SESHDGGQNWEYAKPTDLPNPNSGIDGVKLRDGSVLLAYNTISRGVLKVALSDDDGDSWCDALTLEEDLEMEFSYPAVIQASDGCVHITYTYN | |||
| Full Sequence |
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| Protein Sequence Length: 325 Download |
| MSVPPIINLR KDRFLEGPVL QEYTFAANSV PFNSCHASTI VEVDIDHFLV AYFGGSSEGA 60 PDVKIWLQTY KNGYWQPPEV ADEQPDVPMW NPVLFKLSSG ELLLFYKIGQ EVQKWSGCLK 120 RSYDKGVTWT KREQLPPGIL GPIKNKPILL ENGDLLCGSS VESWNSWGAW VEVATDSVRS 180 WRKYGPIYIE NETLSVIQPV PYQTAKGTLR LLMRSFDHIG RVCISESHDG GQNWEYAKPT 240 DLPNPNSGID GVKLRDGSVL LAYNTISRGV LKVALSDDDG DSWCDALTLE EDLEMEFSYP 300 AVIQASDGCV HITYTYNRTQ VKDI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.002 | 75 | 283 | 249 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 7.0e-26 | 31 | 324 | 349 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 7.0e-93 | 46 | 312 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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