| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna30104.1-v1.0-hybrid |
| Family | GT30 |
| Protein Properties | Length: 465 Molecular Weight: 52009.9 Isoelectric Point: 8.6712 |
| Chromosome | Chromosome/Scaffold: 6 Start: 12059282 End: 12063293 |
| Description | KDO transferase A |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT30 | 41 | 220 | 0 |
| RWPERLGRPSFPRPPGPLLWFHAVSLGEGMSAIPVIKECIRKRPDLTILMTTTTSSAFEVIKNRLPTSVIHQFAPIDTPSAMETFLCHWKPNAIVLMESE LWPNLIIGASEKGIMLALLNARVSTKSFKRWSRPVLLPLISLMLSKFSLIAPLSTAQAIHFQLLCAPPFVINFSGDLKYV | |||
| Full Sequence |
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| Protein Sequence Length: 465 Download |
| MAATKGKLVY NIYRAVSHGL SPLLYLHLHW RKLRGLEHPL RWPERLGRPS FPRPPGPLLW 60 FHAVSLGEGM SAIPVIKECI RKRPDLTILM TTTTSSAFEV IKNRLPTSVI HQFAPIDTPS 120 AMETFLCHWK PNAIVLMESE LWPNLIIGAS EKGIMLALLN ARVSTKSFKR WSRPVLLPLI 180 SLMLSKFSLI APLSTAQAIH FQLLCAPPFV INFSGDLKYV VEEFDICEGE TRSIEDLTLH 240 LSHRQVWMAS SIHKGEEEVI LGIHKVLTQE YPDLFTIIVP RHPQHGKEIA QKLWREGHGV 300 ALRSQHHKLV EETNILVVDT LGELRHLYRL TPIAVIGGSF FPSLSGHNIS EAAAAGCAIL 360 TGPYVGHFSC MVLEMQRLNP LSVLQVSAGL ELEEALRKLL RDVKILEEHR VAAKQVYHAL 420 SGGIVGNVWN LLDFHILQRN LSLKNNEDQH AMGNLVASIC VPSH* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 9.0e-63 | 38 | 219 | 184 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 1.0e-104 | 13 | 369 | 361 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 3.0e-110 | 12 | 369 | 362 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 2e-24 | 59 | 365 | 43 | 311 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 2xcu_C | 2e-24 | 59 | 365 | 43 | 311 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 2xcu_B | 2e-24 | 59 | 365 | 43 | 311 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 2xcu_A | 2e-24 | 59 | 365 | 43 | 311 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 2xci_D | 2e-24 | 59 | 365 | 43 | 311 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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