| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna30547.1-v1.0-hybrid |
| Family | GT5 |
| Protein Properties | Length: 1071 Molecular Weight: 120717 Isoelectric Point: 6.114 |
| Chromosome | Chromosome/Scaffold: 3 Start: 1527943 End: 1534454 |
| Description | starch synthase 4 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 586 | 1059 | 0 |
| KKVGGLGDVVAGLSKALQKKGHLVEIILPKYDCMEYDRVRDLRALDAAVESYFDGRLFKNKIWVGTVEGLPIYFIEPLHPDKLFWRGQFYGERDDFRRFS YFSRAALELLLQAGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTSPASDLASCGLDVTQLNRPDRMQDNSAHDRINPVKGAVVF SNIVTTVSPTYAQEVRTAEGGRGLHSTLNFHSKKFIGILNGIDADAWNPATDAYLKVQYSANDLEGKAENKEAIRKSLGLSSADVRRPLVGCITRLVPQK GVHLIRHAIYRTLELGGQFILLGSSPVHHIQKEFEAIANHFENHDHIRLILKYDETLSHSIYAASDMFIVPSIFEPCGLTQMIAMRYGSIPIARKTGGLN DSVFDVDDDTVPVQFRNGYSFLSPDEQGLNGALERAFKHYLSKPESWRQLVQKDMNIDFSWDTSASQYEELYSK | |||
| Full Sequence |
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| Protein Sequence Length: 1071 Download |
| MSEFEESPSG VRNTINYISF HFNLREASTG TLVTPELKAH AAIAHKINNL AYHASHSTSP 60 SLSSGADPSM AVRLTTWFVT QGISISSSTS TSRRSHNFSF ASSPASSSSS PSSSCKLRHR 120 NLSCTCLQKR PRARKKSSQG QSSSAEFQPN GEEDFESETA PVPVLNSESV SDDDDDDVHV 180 ISSNDSISSA LTTSDQAAPS DLVGMIRNAE KNILLLNRAR VSALQDLDKI LSEKEELQGE 240 MNALEMRLAE TDARIRVAAQ EKVKMELLGD HLNQVRNEQN FNGGSAERSN GVEIFESESQ 300 LFNEEAPLPY KSSINALVAN LTSLRLENVS LRNDIQELRE ALSNVKNTDE RVVMLEKQRS 360 SLESSLKELE SKLSVSQEDV SKLSNLKVEC KGLWEKVENL QVMLDKSTKQ ADQAIIVLQQ 420 NQEIQKKVDK LEESLEKANV YKESSEKMQQ YNELMQQKIK LMEDRLQRSD EEIHSYVRLY 480 QESVEEFQDT LNTLKEESKR RVMDEPVDDM PWEYWSRLLL IIDGWLLEKK ISVDDAKALR 540 EMVWKRDRRI HDTYMACKEK NVNEAVTTFL RLISSQTRAD GLSFVKKVGG LGDVVAGLSK 600 ALQKKGHLVE IILPKYDCME YDRVRDLRAL DAAVESYFDG RLFKNKIWVG TVEGLPIYFI 660 EPLHPDKLFW RGQFYGERDD FRRFSYFSRA ALELLLQAGK KPDIIHCHDW QTAFVAPLYW 720 DLYAPKGLNS ARICFTCHNF EYQGTSPASD LASCGLDVTQ LNRPDRMQDN SAHDRINPVK 780 GAVVFSNIVT TVSPTYAQEV RTAEGGRGLH STLNFHSKKF IGILNGIDAD AWNPATDAYL 840 KVQYSANDLE GKAENKEAIR KSLGLSSADV RRPLVGCITR LVPQKGVHLI RHAIYRTLEL 900 GGQFILLGSS PVHHIQKEFE AIANHFENHD HIRLILKYDE TLSHSIYAAS DMFIVPSIFE 960 PCGLTQMIAM RYGSIPIARK TGGLNDSVFD VDDDTVPVQF RNGYSFLSPD EQGLNGALER 1020 AFKHYLSKPE SWRQLVQKDM NIDFSWDTSA SQYEELYSKS VARARATVRP * 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 2.0e-139 | 585 | 1057 | 480 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 115 | 1067 | 975 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 0 | 587 | 1060 | 479 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 587 | 1059 | 478 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PRK00654 | glgA | 0 | 587 | 1063 | 480 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rzv_B | 0 | 587 | 1064 | 15 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 587 | 1064 | 15 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0 | 587 | 1064 | 15 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 1rzu_A | 0 | 587 | 1064 | 15 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 3guh_A | 0 | 587 | 1059 | 15 | 475 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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