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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna30795.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 323 Molecular Weight: 35058.1 Isoelectric Point: 4.4897 |
Chromosome | Chromosome/Scaffold: 1 Start: 2958020 End: 2959740 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 130 | 277 | 1.2e-36 |
GSTQDIPTLIIPKDNNFLLSSVEFKGPCKAASVNFQLNGNIVAPNDTNAWGDNKGRWVQFDQVQGLIINEGGQIDGQGQALHFDSCDGLRLSNITHINSA KNHITITSCNDVQISDILIRAPDESPNTDGINISTSTNITIQRSFIGT |
Full Sequence |
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Protein Sequence Length: 323 Download |
MEGRVVAMIF LLMIILVASP SPSSCARLNG FPTTTTLRDD DSIGVYGDQV ATVTSNSFNN 60 KKYGDVFATP YRFHEYRPLS SSQTSDDLQA FPEADGTSTF NVMNYGAIGN DQFDNTQVCL 120 SESMGIDVCG STQDIPTLII PKDNNFLLSS VEFKGPCKAA SVNFQLNGNI VAPNDTNAWG 180 DNKGRWVQFD QVQGLIINEG GQIDGQGQAL HFDSCDGLRL SNITHINSAK NHITITSCND 240 VQISDILIRA PDESPNTDGI NISTSTNITI QRSFIGTDAG IGPRLVAIWS NQKQRLYAFL 300 PTPNISLEDV SCKQERDRNA AK* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-20 | 72 | 312 | 265 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-24 | 84 | 277 | 213 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-25 | 100 | 259 | 181 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-32 | 97 | 312 | 227 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 8.0e-42 | 100 | 259 | 165 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Signal Peptide |
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Cleavage Site |
25 |
Sequence Alignments (This image is cropped. Click for full image.) |
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