| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna30875.1-v1.0-hybrid |
| Family | GH18 |
| Protein Properties | Length: 729 Molecular Weight: 80066.1 Isoelectric Point: 6.9441 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3324740 End: 3329577 |
| Description | Glycosyl hydrolase family protein with chitinase insertion domain |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH18 | 98 | 428 | 0 |
| AAYWFPDSGQAASAINSTLFTHLFCAFADLNPTTYQVAISSANSPQFSTFTQTVQQKNPNVKTLLSIGGGNSSPSTFAAMASQAARRKAFIDSSIKLARN YSFYGLDLDWEYPSSTTEMTNFGSLLTEWRSAVANESSTSGKTALLLTAAVFRNADYYSINYPFQAVSSSLDWINVMTYDYYGPSFAEGKTNTYPPAALY NGGSTTLINGDAGIVSWINNAGISTKKIVIGLPFYGYAWRLLNPNNHGFFAPANGSAIGVNGDQGYNQIRVLISRGFQTVYNATVVSNYCYNGTTWIGYD DTQSIGAKVSYAKGKSLLGYFAWHTGADTTT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 729 Download |
| MLTTSPTTAI RAEVAAMAAR VEKRRGREAE REESGGACSN ELSITSLELC EPEPDLGRTG 60 GDPGFTSPSN AQMVRYGISL ETIHYLNVSA AQTTVVKAAY WFPDSGQAAS AINSTLFTHL 120 FCAFADLNPT TYQVAISSAN SPQFSTFTQT VQQKNPNVKT LLSIGGGNSS PSTFAAMASQ 180 AARRKAFIDS SIKLARNYSF YGLDLDWEYP SSTTEMTNFG SLLTEWRSAV ANESSTSGKT 240 ALLLTAAVFR NADYYSINYP FQAVSSSLDW INVMTYDYYG PSFAEGKTNT YPPAALYNGG 300 STTLINGDAG IVSWINNAGI STKKIVIGLP FYGYAWRLLN PNNHGFFAPA NGSAIGVNGD 360 QGYNQIRVLI SRGFQTVYNA TVVSNYCYNG TTWIGYDDTQ SIGAKVSYAK GKSLLGYFAW 420 HTGADTTTWT LSQTDPDGML YRPEQQTNPF HFRYLIVTKK ICGRTSKYTD HLNTFTESSI 480 TTAQDEENTH GKKRGFDQQG HTWIKAGYYY TGNESPASTI DSTLFTHLIC GFAYINSSSY 540 QLSINSSTQQ KFSTFTNVVK LKNSKVTTLL SIWGGREDYS VLFSMLNQSS HRKSFIDSSI 600 RTARLYEFDG LDITGAVPRT VMHTTSLGTF LDEWRAAVDS EASKSGKPDG SMSYNHIKWF 660 IKTYGADPMY NDTYVMNYCT SGSIWINFDD VEAIKTKVSY AKEMGLLGYN VFQVGNDDNW 720 VLSRAAGS* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00636 | Glyco_18 | 2.0e-15 | 505 | 643 | 148 | + Glyco_18 domain. | ||
| cd02879 | GH18_plant_chitinase_class_V | 6.0e-17 | 669 | 723 | 55 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| cd02879 | GH18_plant_chitinase_class_V | 6.0e-41 | 502 | 648 | 148 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| smart00636 | Glyco_18 | 1.0e-76 | 96 | 425 | 345 | + Glyco_18 domain. | ||
| cd02879 | GH18_plant_chitinase_class_V | 2.0e-120 | 93 | 431 | 344 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3aqu_D | 0 | 94 | 425 | 3 | 330 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_D | 7e-38 | 501 | 648 | 2 | 149 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_D | 3e-17 | 648 | 726 | 261 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 0 | 94 | 425 | 3 | 330 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 7e-38 | 501 | 648 | 2 | 149 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| Hydropathy |
|---|
 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
