Basic Information | |
---|---|
Species | Fragaria vesca |
Cazyme ID | mrna31029.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 412 Molecular Weight: 44715 Isoelectric Point: 7.3284 |
Chromosome | Chromosome/Scaffold: 1 Start: 2213174 End: 2215197 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 60 | 396 | 0 |
ATCSSEAENSTLIIPRMRFLLSPITFDGPCKPQRIKILILGRLLAPESPEAWRDFDPGQWLAFRGVNGLEIAGPGTINGRGSGWWNQSCRYHPKLEGCTT LAPTALKVLSCKNIWLRDIHFINSSQSHILIEGCDGIKIENLMIEAPGNSPNTDGIHIHASHNVIINNTIIASGDDCISIGDHISNIAISYIKCGPGHGI SIGSLGKSGNVVQVENVHVSKVTLQGTTNGARIKTWQVGQGNVRGVRFEDFFLDSVKNPIIIDQNYCKVRGACEELPTGVHISDVSFKNFYGTSSTNIAI NLNCSLSVPCTEILMKSIYLRSAIAGQNVTSSCRNAY |
Full Sequence |
---|
Protein Sequence Length: 412 Download |
MHLQGSYLFL VFLGIVYVIT ASSEHEHANT TRATFNVLDY GAVSGRHTDS GMAFWEAWNA 60 TCSSEAENST LIIPRMRFLL SPITFDGPCK PQRIKILILG RLLAPESPEA WRDFDPGQWL 120 AFRGVNGLEI AGPGTINGRG SGWWNQSCRY HPKLEGCTTL APTALKVLSC KNIWLRDIHF 180 INSSQSHILI EGCDGIKIEN LMIEAPGNSP NTDGIHIHAS HNVIINNTII ASGDDCISIG 240 DHISNIAISY IKCGPGHGIS IGSLGKSGNV VQVENVHVSK VTLQGTTNGA RIKTWQVGQG 300 NVRGVRFEDF FLDSVKNPII IDQNYCKVRG ACEELPTGVH ISDVSFKNFY GTSSTNIAIN 360 LNCSLSVPCT EILMKSIYLR SAIAGQNVTS SCRNAYGIAF GVVHPSPCFQ I* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-89 | 31 | 405 | 377 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 4.0e-92 | 35 | 397 | 364 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-93 | 30 | 411 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-95 | 1 | 408 | 414 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 8.0e-112 | 35 | 409 | 375 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-30 | 130 | 381 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 3e-16 | 102 | 394 | 50 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 3e-16 | 102 | 394 | 50 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 3e-16 | 102 | 394 | 50 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.000000000000001 | 34 | 400 | 20 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |