Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna31030.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 677 Molecular Weight: 75877.9 Isoelectric Point: 8.5079 |
Chromosome | Chromosome/Scaffold: 1 Start: 2216567 End: 2218597 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 37 | 658 | 0 |
ENAVEIKMVKNGVVLDNKLVQITFSNPGGDVIAISYGGIDNLLEINNVEGDRGYWDVVWDNVAETVHTQNKLPGTQFKVITQSPDQVEISFITTYNANLH RGDNGVTVPVNIDKRYILQRGRTGFYTYAIFERLQGWPGGRMETLRVAFKLQGAKFRYMAVSDTRQRFMPTAQDRARGKPLAYKEAVLLNNETSSPEFAG EVDDKYQYSAEDKDIKVHGWISMAPPVGFWMITPSDESRMAGPFKQDLTSHVGPTSMTVFSCSHYVGRDVGLTFREGEAWKKLFGPVYVYLNSAPPSSDS RSLIRTLWNNAKDQMVQEVKSWPYNFISSQDYPPSNQRGSVSGQLLVNDRYIPGIWVASSAYVGLAAPGEVGSWQKESKGYQFWTQTDAKGNFFIEHVRP GHYNLYASVPGIVGDYKYEVDIIIKPGSKIQLGSITYQPPRIGPTLWEIGIPDRSAAEFYIPEPYPTLTNKLYKGSELDKFRQYGLWARYNELYPKNDLI YKVGASNYRHDWFYAQVCRFVGNNKYVGTTWQIQFELNAVNPGIYTLQLALASATYAELEVRVNNANAKPPLFSTGLIGDDNAIARHGIHGLYWFWSIKI PSTSLHKGSNTIYLTQTRGGTP |
Full Sequence |
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Protein Sequence Length: 677 Download |
MRNLTALLLT GIVLCCSCFV DGTAARSPGS HGLPRQENAV EIKMVKNGVV LDNKLVQITF 60 SNPGGDVIAI SYGGIDNLLE INNVEGDRGY WDVVWDNVAE TVHTQNKLPG TQFKVITQSP 120 DQVEISFITT YNANLHRGDN GVTVPVNIDK RYILQRGRTG FYTYAIFERL QGWPGGRMET 180 LRVAFKLQGA KFRYMAVSDT RQRFMPTAQD RARGKPLAYK EAVLLNNETS SPEFAGEVDD 240 KYQYSAEDKD IKVHGWISMA PPVGFWMITP SDESRMAGPF KQDLTSHVGP TSMTVFSCSH 300 YVGRDVGLTF REGEAWKKLF GPVYVYLNSA PPSSDSRSLI RTLWNNAKDQ MVQEVKSWPY 360 NFISSQDYPP SNQRGSVSGQ LLVNDRYIPG IWVASSAYVG LAAPGEVGSW QKESKGYQFW 420 TQTDAKGNFF IEHVRPGHYN LYASVPGIVG DYKYEVDIII KPGSKIQLGS ITYQPPRIGP 480 TLWEIGIPDR SAAEFYIPEP YPTLTNKLYK GSELDKFRQY GLWARYNELY PKNDLIYKVG 540 ASNYRHDWFY AQVCRFVGNN KYVGTTWQIQ FELNAVNPGI YTLQLALASA TYAELEVRVN 600 NANAKPPLFS TGLIGDDNAI ARHGIHGLYW FWSIKIPSTS LHKGSNTIYL TQTRGGTPLQ 660 GVMYDYIRLE GPAEKP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.007 | 421 | 447 | 27 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 4.0e-32 | 373 | 471 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-48 | 483 | 670 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-61 | 46 | 336 | 296 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-71 | 7 | 238 | 234 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |