Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna31694.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 368 Molecular Weight: 38383.2 Isoelectric Point: 6.8245 |
Chromosome | Chromosome/Scaffold: 1 Start: 14225680 End: 14227170 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 26 | 354 | 0 |
WDKACDSVDPSVIYVPTGRFLLRNAVFAGPCKNMAITFRIAGTLVAPSDYRVIGNAGNWLFFRHVNGVTISGGILDGQGTGLWDCKASGKGCPSGATTLG FSNSNNIVVSGVTSLNSQMFHIVINGCNNVKLQGVRVSASSNSPNTDGIHVGKSSGVIILDSKIATGDDCVSIGPGTTNLWIENVACGPGHGISIGSLGK DQEEEGVQNVTVKTVTFTGTQNGLRIKSWGRLSTGFAKNILFQHAFMVNVRNPIVIDQNYCPGEIGCPGQDSGVQISDVTYQDIHGTSATEVAVKFDCSS KFPCSKITLDDVKLSYKNEAAEASCSHAG |
Full Sequence |
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Protein Sequence Length: 368 Download |
MTYNVADLGA KPDGQTDSTK AFLSAWDKAC DSVDPSVIYV PTGRFLLRNA VFAGPCKNMA 60 ITFRIAGTLV APSDYRVIGN AGNWLFFRHV NGVTISGGIL DGQGTGLWDC KASGKGCPSG 120 ATTLGFSNSN NIVVSGVTSL NSQMFHIVIN GCNNVKLQGV RVSASSNSPN TDGIHVGKSS 180 GVIILDSKIA TGDDCVSIGP GTTNLWIENV ACGPGHGISI GSLGKDQEEE GVQNVTVKTV 240 TFTGTQNGLR IKSWGRLSTG FAKNILFQHA FMVNVRNPIV IDQNYCPGEI GCPGQDSGVQ 300 ISDVTYQDIH GTSATEVAVK FDCSSKFPCS KITLDDVKLS YKNEAAEASC SHAGGTALGT 360 VQPTSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-90 | 30 | 353 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-93 | 2 | 363 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-98 | 5 | 367 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-107 | 2 | 366 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-140 | 3 | 367 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 98 | 340 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 2e-17 | 88 | 350 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-17 | 88 | 350 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 0.000000000000003 | 97 | 340 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000003 | 97 | 340 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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