Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna31695.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41004.2 Isoelectric Point: 7.0703 |
Chromosome | Chromosome/Scaffold: 1 Start: 14231761 End: 14233405 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 379 | 0 |
WAEACASANPSVIYVPTGRFFLRNAVFNGPCKNTAITFRIAGTLVAPSDYRVIGNAGNWLLFEHVNGVTISGGIFDGQGTGLWDCKASGNSCPSGATTLG FSNSNNIIVSGVTSLNSQMFHIVINGCNNVKMQGVRVSASGQSPNTDGIHVQKSSGVTILDSKIATGDDCVSIGPGTTNLWIENIVCGPGHGISIGSLGK DQQEDGVQNVTVRTATFTGTQNGVRIKSWGRPSTGFAKNILFQHAVMINVQNPIVIDQNYCPAEKGCPGQVSGVQISDVTYQDIHGTSATEVAVKFDCSS KYPCSKITLDDVKLSYKNQAAEASCSHAG |
Full Sequence |
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Protein Sequence Length: 393 Download |
MANPRSLTLL SLLFLFINSG VSTAVMTYNV ADLGAKPDGQ TDSTKAFLSA WAEACASANP 60 SVIYVPTGRF FLRNAVFNGP CKNTAITFRI AGTLVAPSDY RVIGNAGNWL LFEHVNGVTI 120 SGGIFDGQGT GLWDCKASGN SCPSGATTLG FSNSNNIIVS GVTSLNSQMF HIVINGCNNV 180 KMQGVRVSAS GQSPNTDGIH VQKSSGVTIL DSKIATGDDC VSIGPGTTNL WIENIVCGPG 240 HGISIGSLGK DQQEDGVQNV TVRTATFTGT QNGVRIKSWG RPSTGFAKNI LFQHAVMINV 300 QNPIVIDQNY CPAEKGCPGQ VSGVQISDVT YQDIHGTSAT EVAVKFDCSS KYPCSKITLD 360 DVKLSYKNQA AEASCSHAGG TAEGTVQPTS CL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 7.0e-91 | 55 | 378 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-96 | 27 | 388 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-96 | 30 | 392 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-111 | 24 | 391 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-146 | 22 | 392 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 123 | 365 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 3e-18 | 113 | 375 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 3e-18 | 113 | 375 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1rmg_A | 6e-18 | 24 | 372 | 17 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 2e-16 | 48 | 359 | 11 | 326 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |