Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna31696.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 358 Molecular Weight: 37412.5 Isoelectric Point: 8.101 |
Chromosome | Chromosome/Scaffold: 1 Start: 14237197 End: 14238651 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 355 | 0 |
WAKACSSASPAVIYVPVGRFLLAKAVFNGPCKNNAITFQIAGTLVAPSDYRVIGNAGNWLFFEHVNGVTISGGILDGQGTGLWDCKASGKGCPKGATTLG FSNSNNIVVNGVSSLNSQMFHIVINGCHNVKMLGVRVSASGNSPNTDGIHVQMSTGVTILNSKISTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGK EQEEVGVQNVTVKTVTFTGTQNGVRIKSWGRPSTGFARNILFQHAVMVNVKNPIVIDQNYCPDEKGCPGQESGIQISDVMYQDIHGTSATEVAVKFDCSS K |
Full Sequence |
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Protein Sequence Length: 358 Download |
MANYSRSLLV LSLVLVFLNF NSALGATTAV TYTVTSLGAN PDGKTDSIKA FHSAWAKACS 60 SASPAVIYVP VGRFLLAKAV FNGPCKNNAI TFQIAGTLVA PSDYRVIGNA GNWLFFEHVN 120 GVTISGGILD GQGTGLWDCK ASGKGCPKGA TTLGFSNSNN IVVNGVSSLN SQMFHIVING 180 CHNVKMLGVR VSASGNSPNT DGIHVQMSTG VTILNSKIST GDDCVSIGPG TSNLWIENVA 240 CGPGHGISIG SLGKEQEEVG VQNVTVKTVT FTGTQNGVRI KSWGRPSTGF ARNILFQHAV 300 MVNVKNPIVI DQNYCPDEKG CPGQESGIQI SDVMYQDIHG TSATEVAVKF DCSSKYP* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-80 | 59 | 357 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-82 | 34 | 357 | 331 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-86 | 28 | 357 | 340 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 5.0e-87 | 24 | 357 | 340 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-123 | 24 | 357 | 334 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-20 | 127 | 336 | 117 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 6e-17 | 59 | 346 | 45 | 325 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 6e-17 | 59 | 346 | 45 | 325 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 7e-16 | 125 | 341 | 80 | 294 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 7e-16 | 125 | 341 | 80 | 294 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |