Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna31826.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 468 Molecular Weight: 50761.8 Isoelectric Point: 5.2429 |
Chromosome | Chromosome/Scaffold: 5 Start: 1920132 End: 1922598 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 419 | 0 |
ESQGGSQLFVPAGKWLTGSFNLTSHFTLYLHKDAVLLASQDENEWPVIDPLPSYGRGRDTAGGRFISLIFGTNLTDVVVTGENGTIDGQGELWWQKFRKG ELKYTRPYLIEIMFSENIQISNLTFINSPSWNVHPVYSSNVLVQGLTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDEYGIAFGMPTK ALVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIFAINTESAVRIKTAVGRGGFVKDIYVRRMTMHTMKYVFWIAGDYGSHADNGYDPNALPVIQNINY HDMVAENVTMAGKLGGLTGDPFTGICISNVTITMAKKGKKVPWNCTDVAG |
Full Sequence |
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Protein Sequence Length: 468 Download |
MAVVVLLVLV FLCTNGVESR KAKHVDCFQY SAISCRAYGA SLADFGGVGD GTTSNTKAFQ 60 AAIQHLSQYE SQGGSQLFVP AGKWLTGSFN LTSHFTLYLH KDAVLLASQD ENEWPVIDPL 120 PSYGRGRDTA GGRFISLIFG TNLTDVVVTG ENGTIDGQGE LWWQKFRKGE LKYTRPYLIE 180 IMFSENIQIS NLTFINSPSW NVHPVYSSNV LVQGLTILAP VTSPNTDGIN PDSCTNTRIE 240 DCYIVSGDDC IAVKSGWDEY GIAFGMPTKA LVIRRLTCIS PFSAVIALGS EMSGGIQDVR 300 AEDIFAINTE SAVRIKTAVG RGGFVKDIYV RRMTMHTMKY VFWIAGDYGS HADNGYDPNA 360 LPVIQNINYH DMVAENVTMA GKLGGLTGDP FTGICISNVT ITMAKKGKKV PWNCTDVAGI 420 SSGVVPQPCE LLADQGPEKI GACNFPEESL PVDNMQVQLC TYRGNYL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-20 | 44 | 429 | 404 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-25 | 42 | 449 | 430 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-25 | 41 | 429 | 408 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-32 | 138 | 417 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-57 | 39 | 335 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 40 | 405 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 40 | 405 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 40 | 405 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 40 | 405 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000000000001 | 34 | 384 | 151 | 534 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |