Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna32082.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 422 Molecular Weight: 46081.6 Isoelectric Point: 8.3095 |
Chromosome | Chromosome/Scaffold: 5 Start: 2685442 End: 2688648 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 129 | 396 | 0 |
NGTIDGQGDVWWNMWRQRTLQFTRPNLIEFINSKNIIISNVIFQNSPFWNIHPVYSSNIVVRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLV AVKSGWDQYGIAYGRPSSDITIRRIRGSSPFAGIAVGSETSGGVENVFVEHINLHNVGVGIHIKTNIGRGGFIRNITVSNVYMEKARKGIKIAGDVGDHP DNNYNPNALPVVKGITLTDIWGIQVLQAGLIQGLKNSPFTGICLSNINLHGMPGTSRTPPWKCSDISG |
Full Sequence |
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Protein Sequence Length: 422 Download |
MPPLWFFLSI FLSLSYSSTA TEPVTCSGIV PMKYRYDKIS IKDFGGVGDG VTVNTKAFRA 60 AIYRIQHLHR RGGTLLYIPP GVYLTESFNL TSHMTLYLAR GAVIKATQGC MPCLMVPYCF 120 VLGVNWRENG TIDGQGDVWW NMWRQRTLQF TRPNLIEFIN SKNIIISNVI FQNSPFWNIH 180 PVYSSNIVVR YVTILAPADS PNTDGIDPDS SSNVCIEDSY ISTGDDLVAV KSGWDQYGIA 240 YGRPSSDITI RRIRGSSPFA GIAVGSETSG GVENVFVEHI NLHNVGVGIH IKTNIGRGGF 300 IRNITVSNVY MEKARKGIKI AGDVGDHPDN NYNPNALPVV KGITLTDIWG IQVLQAGLIQ 360 GLKNSPFTGI CLSNINLHGM PGTSRTPPWK CSDISGAAHL VSPIQCSELT SAQHASSCSN 420 Y* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-20 | 39 | 377 | 362 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 8.0e-23 | 37 | 417 | 401 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-23 | 39 | 379 | 358 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-30 | 130 | 394 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-44 | 40 | 342 | 355 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-38 | 38 | 379 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-38 | 38 | 379 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-38 | 38 | 379 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-38 | 38 | 379 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-21 | 15 | 320 | 1 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |