Basic Information | |
---|---|
Species | Fragaria vesca |
Cazyme ID | mrna32372.1-v1.0-hybrid |
Family | AA3 |
Protein Properties | Length: 1408 Molecular Weight: 156222 Isoelectric Point: 7.2167 |
Chromosome | Chromosome/Scaffold: 5 Start: 959157 End: 973269 |
Description | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA3 | 878 | 1400 | 0 |
SYYDYIIVGGGTAGCPLAATLSQNASVLLLERGVSPYGNPNITNLDAFGASLADLSPTSPSQRFVSEDGVINARARVLGGGSCLNAGFYTRAATDYVREA GWDGRLVNQSYEWVEQLVAFRPPIRGWQSAVRDGLLEAGVVPNNGFTYDHIYGTKVGGTIFDVEGHRHTAADLLEYADSTRLTVLLHATVHKILFRTRGK TRPLAHGVAFRDASGAQHKAYLKEGSNNEIIISAGAIGSPQILMLSGVGPEEHLKAYNITVVLNQPMVGQGMSDNPMNAIFVPSPRPVEVSLIQVVGITC FGSYIEAAGGENFSPRNYGMLSPKIGQLSTLPPKQRTPEALAETVEFMNSLDERAFKGGFILEKILGPVSTGHLELQTLNPNDNPSVTFNYFQDPVDLER CVQGLRTIEKLVESKAFSNFRFDNMSIPTLLNNTVRAPINLLPKHENSSRSLEQFCKDTVMTIWHYHGGCQVGRVVDQQYKVLGVDALRVIDGSTFNYSP GTNPQATVMMLGRYMGQIILNER |
Full Sequence |
---|
Protein Sequence Length: 1408 Download |
MELRSPPSSA DDGAPPPQRT PAASPITFPP RRVRRIPVFQ RDHPKLQIKS ISPETEIRRY 60 YINYKLMKKK VKRYAQQIKD GTLDRRHVLK DFSMMLDNQI ETIVLFMLEQ QGLLASRIAK 120 LGQRHDALQQ QPDISQIVEL REAYRQVGRD LLKLLFFVEI NAIGLRKILK KFDKRFGYRF 180 TDYYVKTRAN HPYSQLQQVF KHVGVGAVVG AVSRNLHELQ DRQGSYLSIY DQPSVPLQDP 240 VVDSIKAAVD RLTHSTNFLS FLGQHALILQ EEFPTPVEEQ ADDQRYHFNS LLLNLANTFL 300 YMVNTYIIVP TADDYSISLG AAATVCGVVI GAMAVAQVFS SVYFSAWSNR SYFKPLVFSS 360 IVLFAGNGLY AMAYDLNSIW VLLIGRLLCG FGSARAVNRR YISDCVPLRI RMQASAGFVS 420 ASALGMACGP AIAGLLQTDF KIYKLTFNQD TLPGWVMAVA WLLYLIWLCI SFKEPVREDE 480 DTPVETNGGQ AENDALEKGL KKPLLVASEN KNEDEDDDLD IDESEEAVDE SRRPATSIGS 540 AYRLLTPSVK VQLLIYFMLK YAMEILLSES SVVTTYYFNW STSSVAIFLA SLGLTVLPVN 600 ILVGSYISNM FEDRQILLAS EILVFLGIVL SFNVIIPYTV AQYVVSGLIM FVSAEVLEGV 660 NLSLLSRVMS SRLSRGTYNG GLLSTEAGTL ARVVADGTIT LAGYLGDSKL LNVTLLPSLF 720 ICITSILGLE SYVFLQILKI QFVKFHTRPR PTPVLRCNGH RTNQQPEQFH HHQQLPWNIM 780 DPRSVDNFHH NCHQLLLWSA TVWLPNIVSG TLMLSYGCKQ IEEKKASRFE LPSSFFLSSV 840 LEELVFGAAI LFLLGFCNSD TAPNFTFMHN ARRAPAISYY DYIIVGGGTA GCPLAATLSQ 900 NASVLLLERG VSPYGNPNIT NLDAFGASLA DLSPTSPSQR FVSEDGVINA RARVLGGGSC 960 LNAGFYTRAA TDYVREAGWD GRLVNQSYEW VEQLVAFRPP IRGWQSAVRD GLLEAGVVPN 1020 NGFTYDHIYG TKVGGTIFDV EGHRHTAADL LEYADSTRLT VLLHATVHKI LFRTRGKTRP 1080 LAHGVAFRDA SGAQHKAYLK EGSNNEIIIS AGAIGSPQIL MLSGVGPEEH LKAYNITVVL 1140 NQPMVGQGMS DNPMNAIFVP SPRPVEVSLI QVVGITCFGS YIEAAGGENF SPRNYGMLSP 1200 KIGQLSTLPP KQRTPEALAE TVEFMNSLDE RAFKGGFILE KILGPVSTGH LELQTLNPND 1260 NPSVTFNYFQ DPVDLERCVQ GLRTIEKLVE SKAFSNFRFD NMSIPTLLNN TVRAPINLLP 1320 KHENSSRSLE QFCKDTVMTI WHYHGGCQVG RVVDQQYKVL GVDALRVIDG STFNYSPGTN 1380 PQATVMMLGR YMGQIILNER LAADESK* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05199 | GMC_oxred_C | 2.0e-25 | 1245 | 1389 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR03970 | Rv0697 | 2.0e-36 | 881 | 1389 | 561 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
TIGR01810 | betA | 2.0e-37 | 881 | 1400 | 573 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 3.0e-45 | 880 | 1403 | 568 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 849 | 1401 | 569 | + Protein HOTHEAD |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016021 | integral to membrane |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0022857 | transmembrane transporter activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055085 | transmembrane transport |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 865 | 1404 | 12 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 865 | 1404 | 12 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 865 | 1404 | 12 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 865 | 1404 | 12 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 865 | 1404 | 12 | 521 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |