Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna32454.1-v1.0-hybrid |
Family | GT47 |
Protein Properties | Length: 1872 Molecular Weight: 212860 Isoelectric Point: 8.8014 |
Chromosome | Chromosome/Scaffold: 5 Start: 1425412 End: 1433009 |
Description | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 1222 | 1555 | 0 |
CEGRGVYVYDLPSKFNKDLLGQCRDMVPWMDFCEYFKNEALGESIPKLGDGWYHTHQYSLEPIFHQRILNHPCRVHSENEAKLFYVPFYGGLDILRWHFK NVSNDVKDTLSLELITWLKKQDFWRKNSGRDHVLVLGKISWDFRRKDGSWGTNFLEIDQMQNPIKLLIERQPWQQNDVGIPHPTFFHPNSDDDIMALQWK IISSYRKTLVSFAGAARPSAAESIRSTLIDQCNSAENGKCHFLNCHTGDCDKPESVIELFMESEFCLQPPGDSPTRKSLFDSLISGCIPVLFDPFTAYYQ YPWHLPVEHGKYSVFIDQKDVRGMKVNVVEMLMK |
Full Sequence |
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Protein Sequence Length: 1872 Download |
MNNLKLGVDV VSAHNLLPKD GQGSSDAFVE LYFDGQRFRS TIKEKDLNPV WNESFYFNIA 60 DPSNLHYLTL EAYVYNNVKA THSRSFLGKI SVTGNSFVPY SDAVVLHYPL EKRGIFSRVR 120 GELGLKVYVT DDPTIKSSTP MPASESLTDQ DPGLAQTQGV SAPGMSSFRS EKSQARHTFH 180 HLPNPGQESQ HQHHASAAPD THYVPKHEAD QMKSEQQPAK LVRMYSASAS QPVDYALKET 240 SPYLGGGRVV GGRVIHGDKT ASTYDLVERM YFLYVRVVKA RELPAMDVTG SLDPFVEARI 300 GNYRGITKHY EKQQNPVWNQ VFAFSKDRMQ ASVLEVVVKD KDLLKDDFVG IVRFDINEVP 360 LRVPPDSPLA PEWYRLADKK GEKIKGELML AVWIGTQADE AFSDAWHSDA ATPVDSSPAA 420 SAVIRSKVYH APRLWYVRVN VIEAQDLFAT EKNRFPDAYV KVQIGNQVMK TKTLQARNLN 480 PLWNEDLLFV ASEPFEDHLV ISVEDRVGPG KDEILGRVIL PLNSVDRRAD DRMIHSRWFN 540 LEKPVAVDVD QLKKEKFSSR IHLRVCLDGG YHVLDESTHY SSDLRPTAKQ LWRPAIGVLE 600 LGILNAVGLH PMKTRDGRGT SDTYCVAKYG HKWVRTRTLV DNLCPKYNEQ YTWEVFDPST 660 VLTVGVFDNS QLGDKDSNGH KDLKIGKVRI RISTLEAGRI YTHSYPLLVL HPAGVKKMGE 720 LHLAIRFSCT SFVNMLYTYS KPLLPKMHYV RPFNVMQLDM LRHQAVNIVA ARLGRAEPPL 780 RKEVVEYMSD VDSHLWSMRR SKANFFRLMT VFSGVFAIGK WFTDICMWKN PITTVLVHVL 840 FLMLVFFPEL ILPTAFLYMF LIGVWNFRYR PRYPPHMNTK ISQADLVHPD ELDEEFDTFP 900 TSRNPELVRM RYDRLRSVAG RIQTVVGDVA TQGERLQALL SWRDPRATAL FVTFCLIAAL 960 VMYVTPFQVV AALAGFFMMR HPRFRHRMPS APINFFRRLP ARTDNHCWPE RNCPNKKQER 1020 NVETASFLPK MAVALSKRSS KHLKKEAPKR EPCFCLSPCL CFIALFKFLY RLPAAFLLLF 1080 LIYLWSSSTT IISGNIVHVC ISSRKLNNHY CLSAGSTRPK FELPNLNNAT HYLHTPDPSS 1140 NLSISISPPL SQNNSPISPP PPKVSSEIVI RETVQVVHDE SDPVKNGANK EREEEIANAK 1200 KQVEEQLRLH RSWISNKKHE GCEGRGVYVY DLPSKFNKDL LGQCRDMVPW MDFCEYFKNE 1260 ALGESIPKLG DGWYHTHQYS LEPIFHQRIL NHPCRVHSEN EAKLFYVPFY GGLDILRWHF 1320 KNVSNDVKDT LSLELITWLK KQDFWRKNSG RDHVLVLGKI SWDFRRKDGS WGTNFLEIDQ 1380 MQNPIKLLIE RQPWQQNDVG IPHPTFFHPN SDDDIMALQW KIISSYRKTL VSFAGAARPS 1440 AAESIRSTLI DQCNSAENGK CHFLNCHTGD CDKPESVIEL FMESEFCLQP PGDSPTRKSL 1500 FDSLISGCIP VLFDPFTAYY QYPWHLPVEH GKYSVFIDQK DVRGMKVNVV EMLMKIPKEN 1560 RDDMRRHIVY ELLPGLVYGD SNAQFDKFQD AFSITMSNLM ERVTKLELAT DNSVLAPPRV 1620 TYYTTYVEAP SSSTSTSQNL ASQMLCSSSR LVFRRNLAVA AALVFPRQFS TVSKNTLLRP 1680 SCFPSIKAQS FNPVSSFQFN RSMASQSSQP KTVHDFTVKD ARGNDVDLST YKGKVLLIVN 1740 VASQCGLTNS NYTELAQLYE KYKTQGLEIL AFPCNQFGAQ EPGSNDEIVE FACTRFKAEY 1800 PIFDKVDVNG DKATPLYKFL KSSKGGLFGD SIKWNFSKFL VDKEGNVVNR YAPTTTPLSI 1860 EKDVKKLLGV A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd04019 | C2C_MCTP_PRT_plant | 1.0e-81 | 436 | 586 | 151 | + C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. | ||
cd00340 | GSH_Peroxidase | 1.0e-82 | 1712 | 1864 | 153 | + Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. | ||
PLN02412 | PLN02412 | 2.0e-87 | 1703 | 1871 | 169 | + probable glutathione peroxidase | ||
PLN02399 | PLN02399 | 1.0e-87 | 1660 | 1868 | 209 | + phospholipid hydroperoxide glutathione peroxidase | ||
pfam08372 | PRT_C | 2.0e-90 | 852 | 1004 | 153 | + Plant phosphoribosyltransferase C-terminal. This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). |
Gene Ontology | |
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GO Term | Description |
GO:0004602 | glutathione peroxidase activity |
GO:0005515 | protein binding |
GO:0006979 | response to oxidative stress |
GO:0016020 | membrane |
GO:0016209 | antioxidant activity |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2p5r_B | 0 | 1703 | 1871 | 1 | 170 | A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From Wolinella Succinogenes |
PDB | 2p5r_A | 0 | 1703 | 1871 | 1 | 170 | A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From Wolinella Succinogenes |
PDB | 2p5q_D | 0 | 1703 | 1871 | 1 | 170 | A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form |
PDB | 2p5q_C | 0 | 1703 | 1871 | 1 | 170 | A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form |
PDB | 2p5q_B | 0 | 1703 | 1871 | 1 | 170 | A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form |