Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g002447m |
Family | CBM22 |
Protein Properties | Length: 922 Molecular Weight: 101971 Isoelectric Point: 6.0496 |
Chromosome | Chromosome/Scaffold: 00004 Start: 2951187 End: 2955988 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 32 | 170 | 1.4e-31 |
NLIVNNDFSMGLHSWHPNCCHAFIASAESHYPEGTSANSVGNHAVVTNRKECWQGLEQDITDKVSPGFTYLVSASVGVSGPHQGSADVLATLKLEQRDSE TSYLFIGKTSVSKDNWENLEGTFSLSAVPDRIVFYLEGP | |||
CBM22 | 205 | 341 | 4.2e-32 |
NIILNPKFEDGLNNWSGRGCKIVLHDSMADGKIVPLSGKVFASATERTQSWNGIQQEITGRVQRKLAYDVTAVVRIFGNNVTTATVQATLWVQTPNQRDQ YIVIANVQATDKDWAQLHGKFLLNGSPARVVIYMEGP | |||
CBM22 | 376 | 517 | 1.49939e-43 |
NIITNSELSDGTNGWFPLGNCTLSIGTGSPHILPPMARDSLGPHEPLSGHYILVTNRTQTWMGPAQMITEKLKLFLTYQVAAWVRIGSGATGPQNVNIAL GVDNQWVNGGQVEINDDRWHEIGGSFRIEKQPSKVMVYIQGP | |||
GH10 | 574 | 843 | 0 |
KQTQNSFPIGSCINRSQIDNEDFVKFFTKYFNWAVFGNELKWYWTESQQGNFNYKDADDMLDLCLNHNIQTRGHCIFWEVQATVQPWIQSLNKNDLMTAV QNRLTGLLARYKGKFRHYDVNNEMLHGSFYQDKLGKDIRAYMFKTAHQLDLSATLFVNDYHVEDGCDPRSSPEKYIEHILNLQEQGAPVGGIGIQGHIDS PVGPIVCSALDNLGILGLPIWFTELDVSSINEYVRGEDLEVMLREAFAHPAVEGIMLWGFWELFMSRDSA |
Full Sequence |
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Protein Sequence Length: 922 Download |
MESQHANNGN DNSAALIAEH NKINLSTSTA ANLIVNNDFS MGLHSWHPNC CHAFIASAES 60 HYPEGTSANS VGNHAVVTNR KECWQGLEQD ITDKVSPGFT YLVSASVGVS GPHQGSADVL 120 ATLKLEQRDS ETSYLFIGKT SVSKDNWENL EGTFSLSAVP DRIVFYLEGP APGVDLLIRS 180 VVITCSSPSE CENKSIGCNI AGDENIILNP KFEDGLNNWS GRGCKIVLHD SMADGKIVPL 240 SGKVFASATE RTQSWNGIQQ EITGRVQRKL AYDVTAVVRI FGNNVTTATV QATLWVQTPN 300 QRDQYIVIAN VQATDKDWAQ LHGKFLLNGS PARVVIYMEG PPPGADILVN SLVVKHAEKI 360 PPSPPPVIEN PAFGVNIITN SELSDGTNGW FPLGNCTLSI GTGSPHILPP MARDSLGPHE 420 PLSGHYILVT NRTQTWMGPA QMITEKLKLF LTYQVAAWVR IGSGATGPQN VNIALGVDNQ 480 WVNGGQVEIN DDRWHEIGGS FRIEKQPSKV MVYIQGPASG IDVMVAGLQI FPVDREARFR 540 HLRRQTDKIR KRDVVLKLSG LDCSSMLGTF VKVKQTQNSF PIGSCINRSQ IDNEDFVKFF 600 TKYFNWAVFG NELKWYWTES QQGNFNYKDA DDMLDLCLNH NIQTRGHCIF WEVQATVQPW 660 IQSLNKNDLM TAVQNRLTGL LARYKGKFRH YDVNNEMLHG SFYQDKLGKD IRAYMFKTAH 720 QLDLSATLFV NDYHVEDGCD PRSSPEKYIE HILNLQEQGA PVGGIGIQGH IDSPVGPIVC 780 SALDNLGILG LPIWFTELDV SSINEYVRGE DLEVMLREAF AHPAVEGIML WGFWELFMSR 840 DSAHLVNAEG DINEAGKKFL NLKQEWLSHA QGHVDEQGEF AFRGFHGTYT IVIPTLHKKI 900 VKTFVVDKGE SPLVVTIDLS S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 6.0e-14 | 205 | 343 | 140 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 8.0e-18 | 31 | 172 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-32 | 592 | 833 | 264 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 3.0e-76 | 613 | 857 | 266 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 2.0e-78 | 578 | 863 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 1 | 919 | 1 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 28 | 919 | 90 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 15 | 919 | 147 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 32 | 525 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 204 | 530 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 8e-28 | 611 | 832 | 47 | 268 | A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii |
PDB | 1i1w_A | 8e-28 | 611 | 832 | 47 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1tux_A | 9e-28 | 611 | 832 | 47 | 268 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 2e-27 | 611 | 832 | 47 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1gor_A | 3e-27 | 611 | 832 | 47 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC918981 | 273 | 650 | 922 | 0 |
DY306813 | 273 | 650 | 922 | 0 |
EB442796 | 298 | 403 | 700 | 0 |
EB442796 | 112 | 72 | 183 | 0.000000009 |
EB442796 | 116 | 239 | 354 | 0.00000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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