Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g006741m |
Family | PL4 |
Protein Properties | Length: 634 Molecular Weight: 73018.2 Isoelectric Point: 7.2946 |
Chromosome | Chromosome/Scaffold: 01219 Start: 5122 End: 10722 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 11 | 616 | 0 |
KHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNV DKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDK DIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMV EVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDY KYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHV TRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQ SRSRSP |
Full Sequence |
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Protein Sequence Length: 634 Download |
MTSLGVQLNT KHRRLVVMDN GLVQVTLSNP EGEVIGIKYN EIDNVLETQN EEDNRGYWDV 60 VWYEPEKQGS YDKLIATDFK VIMQDENQVE VSFTRTWNIS LRGSLAPLNV DKRYIMRRGV 120 SGFYFYAIME RKEGWPDVDM DQIRTVFKLQ QNKFHFMAIS NDRQRIMPMP EDRATGQPLA 180 YPEAVLLTDP INPDLRGEVD DKYQYSSEDK DIRVHGWISS DPPVGFWMIT PSDEFRSGGP 240 NKQDLTSHVG PVVLSMFTST HYAGKEINTE FRNGEPWKKV FGPALVYLNS VSSEEKPLNL 300 WEDAKRQMMV EVRKWPYNFP ESVDFPKRNQ RGGVFGQLRV HDRYISNRLM WADSAYVGLA 360 APGGVGSWER DSKGYQFWTK ANKRGYFSIK NVRQGDYNLY AWIPGIVGDY KYSANITVRA 420 GSNINLGVLV YEPPRKGPTL WEIGIPDRSA AEFFVPDPYP TLANQLYTNH PEKFRQYGLW 480 ERYVDLYRND DLEYTVGDSY HAKDWFFAHV TRDVGNRTYK PTTWRIIFEL KHLNNNGHYT 540 LQLALASATD SDLHVRFNNP NADPPHFATG TIGKDNAIAR HGIHGLYRLY SIDVPSVLLN 600 RGRNTIYLTQ SRSRSPFQGV LYDYIRLEGP PKT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-28 | 330 | 429 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-43 | 441 | 628 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 4.0e-73 | 16 | 294 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-89 | 14 | 199 | 188 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 3 | 633 | 49 | 677 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 2 | 633 | 43 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 16 | 633 | 1 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 630 | 36 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 15 | 633 | 1 | 621 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY969340 | 323 | 227 | 548 | 0 |
GW864372 | 310 | 146 | 453 | 0 |
JG640880 | 273 | 153 | 423 | 0 |
EL398250 | 271 | 133 | 403 | 0 |
EH792178 | 287 | 304 | 587 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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