y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g007269m |
Family | PL4 |
Protein Properties | Length: 611 Molecular Weight: 70347.4 Isoelectric Point: 5.6406 |
Chromosome | Chromosome/Scaffold: 00004 Start: 2568113 End: 2572181 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 19 | 580 | 0 |
SYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKD KFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVG PTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYI AANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYA AEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHV SVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQA |
Full Sequence |
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Protein Sequence Length: 611 Download |
MSSYCKFCYY YYYFLSTYSY WDLVWSKPGK KGTKGTLDRI EATNFTVIVE NEEQVEVSFT 60 RLWNSSLEGQ VVPLNIDKRF IMLHGSSGFY TYAIFEHLGE WPAFNIDNIR MAFKLNKDKF 120 HFMSIADNRQ RLVPLPDDRL PGRGQVLAYP EAVLLVNPVE PEFKGEVDDK YLYSCKSQDI 180 RVHGWICADP PVGFWQITPS IESRSAGPLK QYLASHVGPT SLALFHSVHY SGADLILRFG 240 HSEPWKKVFG PIFIYLNSLS NEDDPLLLWE DAKQQMIFEV QSWPYDFPAS KDFPQSDQRG 300 TLHGRLLVED RYINMDYIAA NGAYVGLAPP GNAGSWQREC KGYQFWARAN ADGYFYIDHI 360 RTGNYSLYAF VPGFIGDYKY DFNITIIEGS YIDIGDLVYK PPRNGPTLWE IGIPDRYAAE 420 FYVPDPDPKY INKLYVNHTD RYRQYGLWER YAELYPDEDL IYIVNQSDYR KDWFFAQVTR 480 KKDNQTYEGT TWQIKFELDN VNESAVYKLR LALASAHVSV LQVRINDPST EPPLFSTGQI 540 GKENTIARHG IYGLYWLFNV DVPGALFVKG NNNTIYLTQA LSGSPFRGVM YDYIRLEGPP 600 LPPCNSSNNN * 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 6.0e-29 | 298 | 397 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 9.0e-48 | 409 | 597 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-54 | 21 | 264 | 247 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-69 | 21 | 167 | 147 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 19 | 607 | 55 | 652 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 20 | 607 | 40 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 16 | 602 | 52 | 634 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 16 | 605 | 52 | 639 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 20 | 600 | 56 | 635 | lyase, putative [Ricinus communis] |