Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g009748m |
Family | GH28 |
Protein Properties | Length: 528 Molecular Weight: 57487.5 Isoelectric Point: 8.984 |
Chromosome | Chromosome/Scaffold: 00003 Start: 1724498 End: 1728453 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 134 | 483 | 0 |
AAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLI IPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG DDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKN QTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQER |
Full Sequence |
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Protein Sequence Length: 528 Download |
MRGLSFRSLA FLFLIAFLVW SASFETCNAR RGRHWRHGRS SNSVSLSKKN NKGNTHRKGG 60 HHNYHNGKPK PKPKPKPKAP SHNKSPPLAP AVPTKPVYDV PPPSHHSSVF NVKDFGAKGN 120 GVSDDTKAFE AAWAAACKVE ASIMVVPAES VFLVGPMSFS GPYCQANIIF QLDGTIIAPT 180 GSKDWGKGLL WWLDFTKLKG ITIQGKGIID GRGSVWWQDY PYDDPIDDES KLIIPLHNNT 240 LPYKPPTPIR SELSGKMPSI KPTALRFYGS FNVTVTGITI QNSPQCHLKF DNCIGVVVHD 300 VSVSSPGDSP NTDGIHLQNS KDVLIHTSNL ACGDDCVSIQ TGCSNVYVHN VNCGPGHGIS 360 IGSLGKDNTK ACVSNITVRD VMMHNTMNGV RIKTWQGGSG SVQGVLFSNI QVSEVQLPIV 420 IDQFYCDKST CKNQTSAVAL SGITYERVKG TYTVKPVHFA CSDSLPCVDV TLSVIELKPV 480 QERYHMYDPY CWQAFGESTT PTHPPIACLQ KGKRPSNRPQ SSPDACF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-68 | 110 | 477 | 373 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-70 | 105 | 478 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-80 | 108 | 478 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-82 | 142 | 477 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-95 | 109 | 509 | 406 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 526 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 2 | 526 | 5 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 526 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 526 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 526 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 148 | 428 | 48 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-20 | 275 | 451 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-20 | 275 | 451 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-20 | 275 | 451 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-20 | 275 | 451 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |