Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g011661m |
Family | PL4 |
Protein Properties | Length: 481 Molecular Weight: 54708.5 Isoelectric Point: 5.206 |
Chromosome | Chromosome/Scaffold: 00004 Start: 2590298 End: 2594228 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 12 | 463 | 0 |
HRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGH YAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGD VGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVN RLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANR PLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSP |
Full Sequence |
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Protein Sequence Length: 481 Download |
MFRYMVIADN RHRQMPLPED LSTGRGQPLA YPEAVQLVNP TDPEHQGEVD DKYQYSCENK 60 DLKVHGWICR TTPVGFWLII PSDEFRSGGP LKQNLTSHVG PTTLAVFLSG HYAGKYMETH 120 IGQDEPWKKV FGPVFIYLNS AADGDDPLWL WEDAKIKMMS EVQSWPYNFP ASEDFQKSEE 180 RGCVSGRLLV QDSNDVISAN GAYVGLAPPG DVGSWQTECK DYQFWTTADE DGCFSIKNIR 240 TGNYNLYAWV PGFVGDYRSD ALVTITSGSN IKMGDLVYEP PRDGPTLWEI GIPDRSAREF 300 NVPDPDPKYV NRLFVNHPDR FRQYGLWSRY TELYPNEDLV YTIGVSDYSK DWFFAQVVRE 360 MDNKTYQGTT WQIKFKLDHV DRNSSYKLRV AIASATLAEL QVRVNDPNAN RPLFTTGLIG 420 RDNAIARHGI HGLYLLYHVN IPGTRFIEGE NTIFLKQPRC TSPFQGIMYD YIRLEGPPVS 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0006 | 226 | 270 | 45 | + Carboxypeptidase regulatory-like domain. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-14 | 2 | 49 | 48 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 7.0e-35 | 180 | 276 | 97 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-39 | 2 | 141 | 140 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 8.0e-54 | 288 | 475 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 2 | 478 | 137 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002285627.1 | 0 | 2 | 478 | 19 | 498 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 2 | 476 | 137 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306520.1 | 0 | 2 | 478 | 137 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 2 | 479 | 153 | 633 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.007 | 223 | 456 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.007 | 223 | 456 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.007 | 223 | 456 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.007 | 223 | 456 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 1nkg_A | 0.007 | 223 | 456 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY792839 | 254 | 123 | 372 | 0 |
EY842989 | 242 | 48 | 285 | 0 |
EY780436 | 241 | 17 | 254 | 0 |
CX674004 | 225 | 257 | 481 | 0 |
EY842989 | 44 | 272 | 314 | 0.000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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