Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g011825m |
Family | PL4 |
Protein Properties | Length: 477 Molecular Weight: 54110.8 Isoelectric Point: 5.1015 |
Chromosome | Chromosome/Scaffold: 00004 Start: 2590298 End: 2594274 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 19 | 459 | 0 |
TGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIG QDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDY QFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFR QYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRD NAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSP |
Full Sequence |
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Protein Sequence Length: 477 Download |
MVIADNRHRQ MPLPEDLSTG RGQPLAYPEA VQLVNPTDPE HQGEVDDKYQ YSCENKDLKV 60 HGWICRTTPV GFWLIIPSDE FRSGGPLKQN LTSHVGPTTL AVFLSGHYAG KYMETHIGQD 120 EPWKKVFGPV FIYLNSAADG DDPLWLWEDA KIKMMSEVQS WPYNFPASED FQKSEERGCV 180 SGRLLVQDSN DVISANGAYV GLAPPGDVGS WQTECKDYQF WTTADEDGCF SIKNIRTGNY 240 NLYAWVPGFV GDYRSDALVT ITSGSNIKMG DLVYEPPRDG PTLWEIGIPD RSAREFNVPD 300 PDPKYVNRLF VNHPDRFRQY GLWSRYTELY PNEDLVYTIG VSDYSKDWFF AQVVREMDNK 360 TYQGTTWQIK FKLDHVDRNS SYKLRVAIAS ATLAELQVRV NDPNANRPLF TTGLIGRDNA 420 IARHGIHGLY LLYHVNIPGT RFIEGENTIF LKQPRCTSPF QGIMYDYIRL EGPPVS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0007 | 222 | 266 | 45 | + Carboxypeptidase regulatory-like domain. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-13 | 1 | 45 | 45 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 7.0e-35 | 176 | 272 | 97 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-38 | 15 | 137 | 123 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 7.0e-54 | 284 | 471 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 1 | 474 | 140 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002285627.1 | 0 | 1 | 474 | 22 | 498 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 1 | 472 | 140 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306520.1 | 0 | 1 | 474 | 140 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 475 | 156 | 633 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.007 | 219 | 452 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.007 | 219 | 452 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.007 | 219 | 452 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.007 | 219 | 452 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 1nkg_A | 0.008 | 219 | 452 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY792839 | 254 | 119 | 368 | 0 |
EY842989 | 242 | 44 | 281 | 0 |
EY780436 | 241 | 13 | 250 | 0 |
CX674004 | 225 | 253 | 477 | 0 |
EY842989 | 44 | 268 | 310 | 0.000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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