Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g012057m |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 51122.6 Isoelectric Point: 4.5632 |
Chromosome | Chromosome/Scaffold: 00016 Start: 1403743 End: 1406469 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 102 | 425 | 0 |
KAACAVEAGVVLAPSDYVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTS SGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYNSMISNGDDCISIGTGCSDVDIADVTCGP SHGISIGSLGAHYSQACVSNITVRNAIIRESDNGLRIKTWQGGTGCVSDLSFENIQMENVRNCINIDQYYCLSKECLNQTSAVFVTGITYRNIKGTYDVR TPPIHFACSDTVPCTKITMAEVEL |
Full Sequence |
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Protein Sequence Length: 473 Download |
MESIRELLLI LLAVILLVQN LSNVEARYHH HKKQKNKGST VPPPASPENP VSSSPSYSPS 60 VPSDPYPNDP VNSTDCIFDV RDYGAVGDGS ADDTAAFRAA WKAACAVEAG VVLAPSDYVF 120 KITSTIFSGP CKPGLVFQLD GVLMPPDGPD TWPKADSRKQ WLVFYKLDDM TFTGKGTIEG 180 NGQPWWDLPC KPHRGPNGST SSGPCDSPAL IRFFMSSNLV VSGLTIQNSP QFHMKFDGCE 240 GVMIDKLSIS SPKLSPNTDG IHIENTKSVG IYNSMISNGD DCISIGTGCS DVDIADVTCG 300 PSHGISIGSL GAHYSQACVS NITVRNAIIR ESDNGLRIKT WQGGTGCVSD LSFENIQMEN 360 VRNCINIDQY YCLSKECLNQ TSAVFVTGIT YRNIKGTYDV RTPPIHFACS DTVPCTKITM 420 AEVELLPYEG QLLDDPFCWN AYGTQETLTI PPIDCLQEGE PQSEQEVSAY GC* 480 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03003 | PLN03003 | 7.0e-62 | 78 | 457 | 388 | + Probable polygalacturonase At3g15720 |
PLN02188 | PLN02188 | 2.0e-65 | 75 | 452 | 382 | + polygalacturonase/glycoside hydrolase family protein |
PLN02218 | PLN02218 | 7.0e-77 | 80 | 425 | 350 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 2.0e-86 | 111 | 425 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 9.0e-101 | 77 | 467 | 394 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 1 | 472 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 472 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 17 | 472 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 472 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 472 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 3e-21 | 79 | 448 | 22 | 360 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 5e-21 | 159 | 425 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-21 | 159 | 425 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-21 | 159 | 425 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-21 | 159 | 425 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |