Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g012308m |
Family | GH28 |
Protein Properties | Length: 467 Molecular Weight: 51418.1 Isoelectric Point: 5.7045 |
Chromosome | Chromosome/Scaffold: 00001 Start: 3819061 End: 3822497 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 417 | 0 |
ADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNG TLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPST KITIHGLIGETKLGAGIAIGSEMSGGVSEVHAENLYFFNSVRGIRIKTSPGRGGYVRNISISNVTLNHVDVAIIFTGHFGEHPDDSYDPSALPIIERITI KNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSESPWNCSYI |
Full Sequence |
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Protein Sequence Length: 467 Download |
MRRSFTLVDV FLVLALFSEA PWAVAGSSQC SQSNLEVFRP HSVSITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAKL FVPAGQWLTG SFDLISHLTL WLDKDAVILG STNSDTWPVI 120 DPLPSYGRGR ELPGGRHRSL IFGRNLTDVV ITGDNGTIDG QGSIWWEWFR NGTLDYTRPH 180 LVELMNSTGV IISNLTFLNP PFWTIHPVYC SHVKVQNVTI RAPLDSPNTD GIDPDSSDDV 240 CIKDCYISTG DDLVSIKSGW DEYGISYGRP STKITIHGLI GETKLGAGIA IGSEMSGGVS 300 EVHAENLYFF NSVRGIRIKT SPGRGGYVRN ISISNVTLNH VDVAIIFTGH FGEHPDDSYD 360 PSALPIIERI TIKNVIGENV KMAGQLEGIE GDTFRYICLS NIKLNGVSES PWNCSYIQGY 420 SDLVFPETCD PLKESIFPMH HLDCYDLSNH FRSSRNQKRL ARLLSW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-27 | 12 | 429 | 449 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-28 | 40 | 380 | 349 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-31 | 141 | 381 | 246 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-34 | 35 | 377 | 356 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-62 | 43 | 338 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 1 | 466 | 1 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 17 | 466 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 445 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 8 | 435 | 1 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 17 | 466 | 27 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.96182e-44 | 41 | 408 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.96182e-44 | 41 | 408 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.96182e-44 | 41 | 408 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.96182e-44 | 41 | 408 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 3e-23 | 11 | 408 | 128 | 565 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |