Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g012788m |
Family | GH28 |
Protein Properties | Length: 457 Molecular Weight: 49389.4 Isoelectric Point: 4.5997 |
Chromosome | Chromosome/Scaffold: 00016 Start: 530730 End: 534053 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 420 | 0 |
ADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQ SLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTT DVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITF KDIIGTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS |
Full Sequence |
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Protein Sequence Length: 457 Download |
MKMPVALLLL LALCSAILIN GEVSDGQCDD QPTLDPRPHS VSITEFGAVG DGKTLNTLAF 60 QNAIFYLKSF ADKGGAQLYV PSGKWLTGSF NLTSHLTLFL EKGAVILGSQ NPSHWDVVDP 120 LPSYGRGIEL PGRRYKSLIN GYMLRDVVVT GDNGTIDGQG SVWWDWFSSQ SLNYSRPHLV 180 EFISSENVVV SNLTFLNAPA YNIHPVYCSN VHIQNISVHA PPESPYTVGI VPDSSDNVCI 240 EDCIIAMGHD AISLKSGWDE YGIAYGRPTT DVHIRRVLLQ SSSGSSVAFG SEMSGGISNV 300 QVEKIHLYDS LNGIEFRTTK GRGGYIRQIV ISDAELYNIN VAFGACGNCG SHPDDDFDPD 360 ALPAIDQITF KDIIGTNITI AGNFTGIQEA PFANICLSNI SLSINPGSYN SWECSNIHGS 420 SESVFPEPCP ELENSSSNSS STCFSLIRYY GRASFL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-14 | 39 | 264 | 237 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-19 | 146 | 418 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-22 | 38 | 339 | 316 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 6.0e-26 | 39 | 426 | 400 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 2.0e-45 | 41 | 344 | 330 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 16 | 430 | 14 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 430 | 1 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 16 | 438 | 14 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 454 | 1 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 3 | 456 | 1 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 8e-33 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8e-33 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8e-33 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 8e-33 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000000000002 | 37 | 380 | 153 | 529 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |