Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g013757m |
Family | PL1 |
Protein Properties | Length: 438 Molecular Weight: 48756.2 Isoelectric Point: 9.5418 |
Chromosome | Chromosome/Scaffold: 00009 Start: 241145 End: 242742 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 152 | 358 | 0 |
IQERPLWITFAHDMVIRLSEELLITSDKTIDARGSNVQIYNGAQITMQFVKNIIIHGLHIRKTKAGKGGMIRDSVSHHGFRSSSDGDGISMFGASHIWID HVSMSGCQDGLIDAVMGSTAITVSNSHFTHQDHVMLLGASDGHPQDSIMQVTVAFNHFGKQLVQRMPRVRFGFAHVVNNDYTHWLMYAIGGSQHPTILSQ GNRFLAS |
Full Sequence |
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Protein Sequence Length: 438 Download |
MAAANAGILL TLFGLASISP ILKANTHDFD EVWQKRAENA RRHALEAYHP NPEEVVSSFN 60 KHVHMMFENG SSTRRYLRGR PYTGRCAATN PIDQCWRCDR NWANNRKRLA DCAQGFGRGT 120 IGGKNGPFYV VTNPADDDLV NPKPGTLRHA VIQERPLWIT FAHDMVIRLS EELLITSDKT 180 IDARGSNVQI YNGAQITMQF VKNIIIHGLH IRKTKAGKGG MIRDSVSHHG FRSSSDGDGI 240 SMFGASHIWI DHVSMSGCQD GLIDAVMGST AITVSNSHFT HQDHVMLLGA SDGHPQDSIM 300 QVTVAFNHFG KQLVQRMPRV RFGFAHVVNN DYTHWLMYAI GGSQHPTILS QGNRFLASNS 360 HHSKEVTKRD SSPQSVWKTW NWRSEMDLMM NGAFFVESGS DVRNVNRQDV IPAKPGKFAS 420 QMTRFSGALN CYVNKPC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam04431 | Pec_lyase_N | 2.0e-17 | 25 | 77 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. |
COG3866 | PelB | 4.0e-28 | 119 | 355 | 249 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 2.0e-61 | 171 | 355 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 3.0e-74 | 164 | 359 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 18 | 437 | 20 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 18 | 437 | 49 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 15 | 437 | 5 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 437 | 1 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 10 | 437 | 11 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 90 | 429 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 90 | 429 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-20 | 118 | 346 | 19 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.00000000000001 | 172 | 359 | 75 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.00000000000006 | 234 | 355 | 186 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |