Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g015319m |
Family | GH28 |
Protein Properties | Length: 410 Molecular Weight: 44538.8 Isoelectric Point: 9.486 |
Chromosome | Chromosome/Scaffold: 00003 Start: 1724498 End: 1729080 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 134 | 395 | 0 |
AAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLI IPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG DDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW |
Full Sequence |
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Protein Sequence Length: 410 Download |
MRGLSFRSLA FLFLIAFLVW SASFETCNAR RGRHWRHGRS SNSVSLSKKN NKGNTHRKGG 60 HHNYHNGKPK PKPKPKPKAP SHNKSPPLAP AVPTKPVYDV PPPSHHSSVF NVKDFGAKGN 120 GVSDDTKAFE AAWAAACKVE ASIMVVPAES VFLVGPMSFS GPYCQANIIF QLDGTIIAPT 180 GSKDWGKGLL WWLDFTKLKG ITIQGKGIID GRGSVWWQDY PYDDPIDDES KLIIPLHNNT 240 LPYKPPTPIR SELSGKMPSI KPTALRFYGS FNVTVTGITI QNSPQCHLKF DNCIGVVVHD 300 VSVSSPGDSP NTDGIHLQNS KDVLIHTSNL ACGDDCVSIQ TGCSNVYVHN VNCGPGHGIS 360 IGSLGKDNTK ACVSNITVRD VMMHNTMNGV RIKTWQVMIP SGTQCYNSE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-52 | 110 | 396 | 290 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-53 | 108 | 396 | 292 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-54 | 105 | 396 | 293 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-54 | 142 | 396 | 255 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-60 | 109 | 396 | 291 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 396 | 4 | 386 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 2 | 396 | 5 | 409 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 396 | 1 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 396 | 4 | 387 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 396 | 1 | 389 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-19 | 88 | 394 | 6 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-19 | 88 | 394 | 6 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-19 | 88 | 394 | 6 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-19 | 88 | 394 | 6 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-16 | 148 | 394 | 48 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |