y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g015702m |
Family | PL1 |
Protein Properties | Length: 403 Molecular Weight: 44033.6 Isoelectric Point: 6.6637 |
Chromosome | Chromosome/Scaffold: 00003 Start: 1016085 End: 1018031 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 122 | 322 | 0 |
WIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVA P |
Full Sequence |
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Protein Sequence Length: 403 Download |
MAIPLLLWLL LCLLAPTFIS SSPVQDPELV VEEVHKSINA SRRNLGFLSC GTGNPIDDCW 60 RCDPKWEENR QQLADCAIGF GKQAIGGKDG KIYVVTDSGD DDPVNPKPGT LRYAVIQDEP 120 LWIIFARDMV ITLKEELIMN SFKTIDGRGA SVHIAGGPCI TVQYVTNIII HGINIHDCKR 180 GGNANVRDSP SHYGWRTISD GDGVSIFGGS HVWVDHCSLS NCNDGLIDAI HGSTAITISN 240 NYMTHHNKVM LLGHSDTFTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWE 300 MYALGGSASP TINSQGNRFV APNDRFNKEV TKYEDAPESE WKNWNWRSEG DLMVNGAFFT 360 PSGAGASSSY AKASSLGARP SSLISSITAG AGSLNCRKGK PC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-25 | 141 | 319 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-73 | 134 | 319 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-80 | 128 | 323 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB59066.1 | 0 | 20 | 402 | 27 | 409 | pectate lyase [Salix gilgiana] |
EMBL | CAN76500.1 | 0 | 16 | 402 | 17 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 16 | 402 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 16 | 402 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285340.1 | 0 | 20 | 402 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 54 | 363 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 54 | 363 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 73 | 320 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000002 | 188 | 393 | 128 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000002 | 188 | 393 | 128 | 358 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |