y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g016398m |
Family | PL1 |
Protein Properties | Length: 391 Molecular Weight: 43470.9 Isoelectric Point: 5.3609 |
Chromosome | Chromosome/Scaffold: 00070 Start: 132957 End: 134383 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 107 | 308 | 0 |
LWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFS HCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFI AS |
Full Sequence |
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Protein Sequence Length: 391 Download |
MSSSFLISLV IFLFPIMQIL EAHERSTTRR QLGPESCRTG NPIDDCWRCD SEWESNRKAL 60 ADCAVGFGRN AVGGRDGEIY IVKSKDDDPV DPIPGSLRYA VIQEEPLWII FDHDMVINLK 120 QELVMNSYKT IDGRGFNVQM SNGPCISIYN VSNIIIHNIY IHDCVPAGSA VVRDSPKHYG 180 PRGRSDGDGI SIFGSRDIWI DHCTFSHCYD GLIDIVYGST AITISNNYMF HHNEVMLMGH 240 SDDFSADKNM QVTIAFNFFG DGLVQRMPRC RHGFFHIVNN IYTGWEMYAI GGSANPTINS 300 QGNVFIASND ESTKEVTKHE IISEDDEWKK WNWRSEGDLM LNGAFFTPSG QETPASYMKA 360 SSMVARPATS LLTASSPSAG ALSCRNSQPC * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-28 | 127 | 305 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-71 | 120 | 305 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-76 | 114 | 309 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAI94495.1 | 0 | 16 | 390 | 34 | 407 | pectate lyase [Dianthus caryophyllus] |
EMBL | CBI39737.1 | 0 | 60 | 390 | 2 | 332 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265729.1 | 0 | 1 | 390 | 1 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317359.1 | 0 | 25 | 390 | 2 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522747.1 | 0 | 1 | 390 | 1 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 41 | 351 | 2 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 41 | 351 | 2 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-21 | 59 | 307 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 2e-16 | 69 | 312 | 37 | 283 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1pe9_B | 0.000000000000003 | 130 | 314 | 90 | 296 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |