Basic Information | |
---|---|
Species | Citrus sinensis |
Cazyme ID | orange1.1g017991m |
Family | GH28 |
Protein Properties | Length: 363 Molecular Weight: 39418.2 Isoelectric Point: 9.1199 |
Chromosome | Chromosome/Scaffold: 00396 Start: 115975 End: 119448 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 79 | 346 | 0 |
KKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHA PTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISI GSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSP |
Full Sequence |
---|
Protein Sequence Length: 363 Download |
MKQLKFCSFS TFFIVLIHVL VCLSASLVST EGFDSLLELP HSGSNGTRSK SKRVIFVGDF 60 GAKGDGFNDD TEAFANAWKK ACSFPARTKI VFSAGYTFLI HPIDISGPCK SRLTLEISGT 120 IVAPKDPDVW KGLNRRRWLY FNRVNHLTVQ GGGTINGMGQ EWWSRSCKIN TTNPCRHAPT 180 AITFHKCKNL KVQNLRVVNS QQMHIAFTNC LRVVISNLEV IAPAESPNTD GIHISASRGV 240 EVKNSIVGTG DDCISIVGNS SLIRIRNFAC GPGHGISIGS LGKSNSSVRI HDIMVYGALI 300 SNTQNGVRIK TWQGGSGSAT NIQFLDVLMK NVSNPIIIDQ YYCDSPVPCA NQVCNPYATC 360 IS* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-75 | 57 | 342 | 287 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 5.0e-79 | 33 | 362 | 333 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 8.0e-84 | 82 | 352 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-106 | 50 | 344 | 297 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 1 | 352 | 352 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55489.1 | 0 | 33 | 353 | 31 | 351 | AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] |
GenBank | ABM67700.1 | 0 | 1 | 352 | 1 | 352 | polygalacturonase [Citrus sinensis] |
RefSeq | NP_565232.1 | 0 | 33 | 353 | 31 | 351 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299601.1 | 0 | 17 | 352 | 16 | 355 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 20 | 352 | 5 | 332 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-23 | 149 | 342 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000003 | 130 | 342 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000003 | 130 | 342 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000003 | 130 | 342 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000003 | 130 | 342 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |