Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g019696m |
Family | CE8 |
Protein Properties | Length: 338 Molecular Weight: 37313.7 Isoelectric Point: 9.5709 |
Chromosome | Chromosome/Scaffold: 00027 Start: 1078073 End: 1080930 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 40 | 331 | 0 |
TVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNIT FKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFS FVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDG |
Full Sequence |
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Protein Sequence Length: 338 Download |
MTRTQFSEQQ FMKWVNFVGR LKHSVFKSAK NKLFPAYTLT VAKNPAAGDF TKIQDAIDSL 60 PFINLVRVVI KVHAGVYKEK VNIPPFKSFI TIEGAGADKT IVQWGDTAQT RGPRGQPIGT 120 WASATFAVNA PYFIAKNITF KNTTPVPAPG AVGKQAVAFR ISADTATFWG CKFLGAQDTL 180 YDHVGRHYYK DCYIEGSVDF IFGNALSLFE GCHVHAIAQY TGALTAQGRS SLLEDTGFSF 240 VNCKVTGSGA LYLGRAWGPF SRVVFAYTYM DNIIIPKGWY NWGDPNREMT VFYGQYKCKG 300 PGASFAGRVS WARELTDEEA KPFISLSFID GSEWIKL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-115 | 48 | 336 | 289 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 7.0e-117 | 38 | 336 | 307 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 6.0e-118 | 38 | 335 | 300 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 7.0e-121 | 2 | 335 | 335 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 0 | 2 | 337 | 336 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 1 | 337 | 43 | 379 | hypothetical protein [Vitis vinifera] |
EMBL | CBI27989.1 | 0 | 25 | 337 | 1 | 313 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 3 | 337 | 49 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 2 | 337 | 46 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 2 | 337 | 48 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 47 | 336 | 16 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9.80909e-45 | 41 | 336 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-29 | 37 | 323 | 31 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 2e-20 | 37 | 323 | 4 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 2e-20 | 37 | 323 | 4 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT759916 | 273 | 66 | 338 | 0 |
EH701256 | 260 | 55 | 314 | 0 |
ES913245 | 276 | 8 | 283 | 0 |
EE105585 | 249 | 54 | 302 | 0 |
DT748463 | 246 | 93 | 338 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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