Basic Information | |
---|---|
Species | Citrus sinensis |
Cazyme ID | orange1.1g020062m |
Family | GH28 |
Protein Properties | Length: 332 Molecular Weight: 36542.8 Isoelectric Point: 8.0192 |
Chromosome | Chromosome/Scaffold: 00213 Start: 210344 End: 214271 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 21 | 305 | 0 |
GGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGID PDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITI RNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFV |
Full Sequence |
---|
Protein Sequence Length: 332 Download |
MDEWPIIDPL PSYGRGRERL GGRHISLIHG DHLTNVIITG YNGTIDGQGQ MWWDLWWNRT 60 LKHTRGHLVE LMNSNNILIS NLTFRNSPFW TIHPVYCRNV VIKGMTILAP LNAPNTDGID 120 PDSSTNVCIE DCYIESGDDL VAVKSGWDHY GIAMARPSSN IIVRRVSGTT PTCSGVGIGS 180 EMSGGIFNVT VDQLHVWDAA AGVRIKTDKG RGGYIENITI RNIKMERVKI PIRISRGSND 240 HPDEGWDPKA LPKIRGISFV NVVSVNTTKA PVLAGIIGTQ FEEICMKNVS LLGLAPSAKW 300 QCQFVSGFTS QVFPLPCPQL QNKSSSWCSF S* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-17 | 42 | 240 | 207 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-21 | 29 | 317 | 309 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-21 | 33 | 239 | 214 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-32 | 28 | 305 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-38 | 35 | 249 | 225 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 1 | 326 | 137 | 462 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 328 | 148 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 328 | 148 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 3 | 331 | 108 | 437 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 3 | 331 | 151 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-29 | 27 | 298 | 116 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-29 | 27 | 298 | 116 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-29 | 27 | 298 | 116 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-29 | 27 | 298 | 116 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-24 | 43 | 305 | 117 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EY839986 | 256 | 60 | 315 | 0 |
HO798662 | 300 | 24 | 323 | 0 |
CO117095 | 276 | 53 | 328 | 0 |
EY197665 | 276 | 3 | 278 | 0 |
EY839986 | 23 | 304 | 326 | 1.5 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|