Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g021449m |
Family | GH28 |
Protein Properties | Length: 313 Molecular Weight: 35288.7 Isoelectric Point: 10.0491 |
Chromosome | Chromosome/Scaffold: 00013 Start: 1582968 End: 1587980 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 108 | 307 | 1.90002e-41 |
KKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKL LNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVV |
Full Sequence |
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Protein Sequence Length: 313 Download |
MVEILSLGRF HLHQNRPDLR RWVPAFLSSH KTLFTVLWLA AFASVFIWQR NAVVGGFSFL 60 RWGVASRPIP RLRPAAFNLT DFGGVGDGVT LNTEAFQRAV YAISKLGKKG GGQLNVPPGR 120 WLTAPFNLTS HMTLFLADDA EILAIENEKY WPLMPPLPSY GYGREHHGPR FGSFIHGQNL 180 KDVVITGHNG TINGQGQAWW KKYRQKLLNN TRGPLVQIMW SSDILISNIT LRDSPFWTLH 240 PYDCKNVTIR NAFISKIQLF DSCEDMVIED CYISVGDDAI AIKSGWDQYG IAYGRPSMNI 300 LIRNLVVRSM VR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12708 | Pectate_lyase_3 | 1.0e-6 | 77 | 134 | 59 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
PLN02793 | PLN02793 | 7.0e-7 | 32 | 282 | 274 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-12 | 171 | 285 | 124 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-15 | 76 | 285 | 222 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-42 | 65 | 310 | 279 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 311 | 1 | 334 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 311 | 1 | 318 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 311 | 1 | 320 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 15 | 311 | 16 | 320 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 311 | 2 | 319 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-26 | 70 | 307 | 21 | 291 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-26 | 70 | 307 | 21 | 291 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-26 | 70 | 307 | 21 | 291 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-26 | 70 | 307 | 21 | 291 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.0000002 | 64 | 152 | 141 | 227 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC892952 | 307 | 9 | 305 | 0 |
DY299512 | 307 | 9 | 305 | 0 |
FC882267 | 296 | 21 | 307 | 0 |
DY265658 | 311 | 1 | 300 | 0 |
DY291517 | 296 | 21 | 307 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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