Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g022635m |
Family | PL1 |
Protein Properties | Length: 295 Molecular Weight: 33516.1 Isoelectric Point: 7.6688 |
Chromosome | Chromosome/Scaffold: 00024 Start: 1066618 End: 1069273 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 24 | 203 | 0 |
IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA |
Full Sequence |
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Protein Sequence Length: 295 Download |
MCLFIDDGPG SLREGCRRRE PLWIVFEVSG TIHLSSYLSV SSYKTIDGRG QRIKLTGKGL 60 RLKECEHVII CNLEFEGGRG HDVDGIQIKP NSRHIWIDRC SLRDYDDGLI DITRQSTDIT 120 VSRCYFTQHD KTMLIGADPS HVGDRCIRVT IHHCLFDGTR QRHPRLRFGK VHLYNNYTRN 180 WGIYAVCASV ESQIYSQCNI YEAGQKKRTF EYYTEKAADK LEAKSGLIRS EGDIFLKGAQ 240 AQLLTGVGEE CVFHPSEYYP TWTMEAPSDS LKQILQICTG WQSIPRPADV MIAN* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 5.0e-40 | 25 | 199 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 5.0e-47 | 21 | 269 | 269 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 3.0e-70 | 38 | 204 | 179 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK92527.1 | 0 | 4 | 290 | 26 | 312 | unknown [Populus trichocarpa] |
EMBL | CAB75748.1 | 0 | 4 | 289 | 51 | 336 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_191074.2 | 0 | 4 | 289 | 41 | 326 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_974439.1 | 0 | 4 | 289 | 17 | 302 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002311134.1 | 0 | 4 | 290 | 41 | 327 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 2e-35 | 5 | 259 | 51 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 2e-35 | 5 | 259 | 51 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-27 | 25 | 201 | 49 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 3e-26 | 40 | 201 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3vmw_A | 9e-20 | 45 | 209 | 82 | 257 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY275282 | 292 | 6 | 295 | 0 |
CX546286 | 258 | 6 | 263 | 0 |
CX546287 | 253 | 43 | 295 | 0 |
CD574040 | 252 | 44 | 295 | 0 |
FC884660 | 271 | 6 | 276 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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