y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g023276m |
Family | AA3 |
Protein Properties | Length: 285 Molecular Weight: 31032.5 Isoelectric Point: 6.514 |
Chromosome | Chromosome/Scaffold: 00040 Start: 351714 End: 355374 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 2 | 277 | 2e-29 |
LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIEN MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSN ASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER |
Full Sequence |
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Protein Sequence Length: 285 Download |
MLSGAHNITV VLDQPLVGQG MSDNPMNAIF VPSPVPVEVS LIQVVGITQF GSYIEAASGE 60 NFAGGSPSPR DYGMFSPKIG QLSKVPPKQR TPEAIAEAIE NMKALDDPAF RGGFILEKVM 120 GPVSTGHLEL RTRNPNDNPS VTFNYFKEPE DLQRCVQGIS TIEKIIESKS FSKFKYESMS 180 VPILVNMTAS APVNLLPRHS NASTSLEQFC RDTVMTIWHY HGGCQVGKVV DHDYKVLGVD 240 ALRVIDGSTF YYSPGTNPQA TVMMLGRYMG VRILSERLAS NDSK* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01810 | betA | 6.0e-8 | 124 | 266 | 149 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
PRK02106 | PRK02106 | 6.0e-11 | 120 | 274 | 159 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 4.0e-14 | 1 | 281 | 300 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
pfam05199 | GMC_oxred_C | 4.0e-23 | 122 | 266 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
PLN02785 | PLN02785 | 4.0e-129 | 1 | 278 | 288 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34759.1 | 0 | 1 | 284 | 288 | 578 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001053612.1 | 0 | 8 | 280 | 305 | 583 | Os04g0573100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002282510.1 | 0 | 1 | 284 | 254 | 544 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298074.1 | 0 | 1 | 282 | 287 | 574 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002446965.1 | 0 | 8 | 280 | 308 | 587 | hypothetical protein SORBIDRAFT_06g025960 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 2.8026e-45 | 7 | 281 | 281 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 2.8026e-45 | 7 | 281 | 281 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 2.8026e-45 | 7 | 281 | 281 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 2.8026e-45 | 7 | 281 | 281 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 2.8026e-45 | 7 | 281 | 281 | 521 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX672181 | 271 | 5 | 275 | 0 |
CV709380 | 239 | 47 | 285 | 0 |
HO799688 | 288 | 1 | 280 | 0 |
CX543978 | 239 | 47 | 285 | 0 |
CX672180 | 234 | 52 | 285 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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