Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g023585m |
Family | GH28 |
Protein Properties | Length: 281 Molecular Weight: 30072.8 Isoelectric Point: 6.5001 |
Chromosome | Chromosome/Scaffold: 00009 Start: 1443366 End: 1448964 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 3 | 255 | 0 |
RQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGH PSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGI TIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGS |
Full Sequence |
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Protein Sequence Length: 281 Download |
MWRQRTLPFT RPNLIEFMNS RSIIISNVIF QNSPFWNIHP VYCSNVVIRY VTILAPADSP 60 NTDGIDPDSS SNVCIEDSYI STGDDLVAVK SGWDEYGIAY GHPSSGITIR RVTGSSPFSG 120 IAVGSETSGG VENVLAEHIN LYNVGVGIHV KTNIGRGGFI RNITVSDVYM ENARKGIKIA 180 GDVGDHPDDK FNPNALPVVN GITIKDVWGT KVQQSGLIQG LKNSPFTGIC LSNINLQGVA 240 GPTSPPLKCS DVSGSAYQVK PWPCSELSSS QQTGACSNHF * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-20 | 12 | 264 | 270 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-21 | 10 | 275 | 276 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 8.0e-23 | 3 | 238 | 242 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-28 | 10 | 256 | 252 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-36 | 11 | 173 | 163 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 1 | 280 | 166 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 1 | 278 | 168 | 445 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 1 | 280 | 166 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 1 | 280 | 133 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 1 | 279 | 167 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-34 | 9 | 238 | 187 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-34 | 9 | 238 | 187 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-34 | 9 | 238 | 187 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-34 | 9 | 238 | 187 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000002 | 3 | 207 | 142 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO801770 | 278 | 2 | 279 | 0 |
DR953387 | 281 | 1 | 281 | 0 |
DR929230 | 281 | 1 | 281 | 0 |
DT769107 | 273 | 9 | 281 | 0 |
DY257052 | 251 | 1 | 249 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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