y
Basic Information | |
---|---|
Species | Citrus sinensis |
Cazyme ID | orange1.1g023976m |
Family | PL1 |
Protein Properties | Length: 275 Molecular Weight: 29883.4 Isoelectric Point: 7.6319 |
Chromosome | Chromosome/Scaffold: 00003 Start: 1016085 End: 1018031 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 3 | 194 | 0 |
ITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAI HGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAP |
Full Sequence |
---|
Protein Sequence Length: 275 Download |
MVITLKEELI MNSFKTIDGR GASVHIAGGP CITVQYVTNI IIHGINIHDC KRGGNANVRD 60 SPSHYGWRTI SDGDGVSIFG GSHVWVDHCS LSNCNDGLID AIHGSTAITI SNNYMTHHNK 120 VMLLGHSDTF TQDKNMQVTI AFNHFGEGLV QRMPRCRHGY FHVVNNDYTH WEMYALGGSA 180 SPTINSQGNR FVAPNDRFNK EVTKYEDAPE SEWKNWNWRS EGDLMVNGAF FTPSGAGASS 240 SYAKASSLGA RPSSLISSIT AGAGSLNCRK GKPC* 300 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-24 | 13 | 191 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-71 | 6 | 191 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-77 | 1 | 195 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB59066.1 | 0 | 1 | 274 | 136 | 409 | pectate lyase [Salix gilgiana] |
EMBL | CAN76500.1 | 0 | 1 | 274 | 130 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 1 | 274 | 130 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 1 | 274 | 185 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285340.1 | 0 | 1 | 274 | 130 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 235 | 76 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 235 | 76 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 1 | 192 | 56 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 3e-16 | 60 | 265 | 128 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 3e-16 | 60 | 265 | 128 | 358 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EX663952 | 274 | 1 | 274 | 0 |
EB428296 | 265 | 1 | 265 | 0 |
BQ505865 | 268 | 1 | 268 | 0 |
CJ773301 | 269 | 8 | 275 | 0 |
GR711159 | 264 | 8 | 271 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|