Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g028660m |
Family | GH28 |
Protein Properties | Length: 207 Molecular Weight: 21863.2 Isoelectric Point: 4.3966 |
Chromosome | Chromosome/Scaffold: 00137 Start: 180048 End: 181232 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 194 | 0 |
VTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYA SNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQSEEDEPKALCNNVDD |
Full Sequence |
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Protein Sequence Length: 207 Download |
MVTAPGDSPN TDGIHVTNTQ NIRITSSTIG TGDDCISIVS GSQNVQAQDI TCGPGHGISI 60 GSLGKGNSNA YVSEVTVDGA KLSETANGVR IKTWQGGSGY ASNIIFQNID MVNVKNPIII 120 DQNYCDQDDP CKEQSSAVHI KNVVFKNIRG TSASDEAVKL DCSKSYPCEA IVLENINLQS 180 EEDEPKALCN NVDDLAQRGS VFPRCP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-57 | 2 | 193 | 193 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-62 | 2 | 192 | 195 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-75 | 1 | 192 | 192 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-81 | 2 | 180 | 179 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-92 | 2 | 205 | 204 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002274775.1 | 0 | 1 | 205 | 242 | 448 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308956.1 | 0 | 2 | 206 | 239 | 443 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313308.1 | 0 | 1 | 205 | 171 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 2 | 205 | 249 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 1 | 206 | 268 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-18 | 2 | 181 | 192 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-16 | 4 | 192 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 4 | 192 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 4 | 192 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 4 | 192 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BU888780 | 207 | 2 | 207 | 0 |
DV152812 | 207 | 1 | 206 | 0 |
DN495824 | 207 | 2 | 207 | 0 |
EH767961 | 206 | 2 | 206 | 0 |
EH756941 | 206 | 2 | 206 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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