Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g036161m |
Family | GH28 |
Protein Properties | Length: 248 Molecular Weight: 26932 Isoelectric Point: 8.4979 |
Chromosome | Chromosome/Scaffold: 01571 Start: 20598 End: 21904 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 169 | 4.6e-25 |
ELMNSNNILIISNLAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVT VDHLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTK |
Full Sequence |
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Protein Sequence Length: 248 Download |
VELMNSNNIL IISNLAFCNS PFRTIHPVYC SIAPNTDGID PDCYIESGNG LVAVKSGWDH 60 DGIAMARPSS NIAVRRVSGT TPTCSGVGIG REMSGRIFNV TVDHLDTDKG RGGNIENIII 120 RNIKMERVKI PIKISRGSNG HPDEGRDPKA IPKIRGISFV NVFSVNTTKA PICMKNVSLL 180 VLAPSVKWQC QFVSGFNGQV FPLPCPQLQN KSSSWCSFLE FSGEDLNFGV QMNCILGMET 240 AFSKLRL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5434 | PGU1 | 2.0e-7 | 19 | 172 | 188 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 1 | 214 | 205 | 462 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 216 | 216 | 476 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 216 | 216 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 1 | 227 | 174 | 445 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 1 | 218 | 217 | 479 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.0000000008 | 1 | 118 | 193 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.0000000008 | 1 | 118 | 193 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.0000000008 | 1 | 118 | 193 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.0000000008 | 1 | 118 | 193 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.004 | 4 | 193 | 156 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY839986 | 253 | 16 | 222 | 0 |
DT523490 | 251 | 33 | 247 | 0 |
CO117095 | 246 | 16 | 216 | 0 |
HO798662 | 241 | 16 | 211 | 0 |
EY839986 | 44 | 192 | 233 | 2.6 |
Sequence Alignments (This image is cropped. Click for full image.) |
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