Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g036262m |
Family | GH28 |
Protein Properties | Length: 196 Molecular Weight: 20864.6 Isoelectric Point: 5.2802 |
Chromosome | Chromosome/Scaffold: 08488 Start: 1895 End: 2596 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 184 | 0 |
RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVEN PIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNVKPT |
Full Sequence |
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Protein Sequence Length: 196 Download |
GRSNGIEISN SIIATGDDCV SLGDGSQNVL VSDVSCGPGH GISVGSLGKY KKEEDVVGLT 60 VINCTFTGTS NGVRIKTWPD SEDGKASNFT FEDLFMNNVE NPIVIDQEYC PHNQCNIKVP 120 SRVKISNVRF RNIRGTSLTK EAVRIVCSKE IPCQNVEIGD INLVYNGIDD KGPAISSCSN 180 VKPTLVGKQI PATCV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-44 | 3 | 163 | 161 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-49 | 3 | 167 | 166 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-53 | 3 | 195 | 194 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-62 | 1 | 182 | 182 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-76 | 2 | 194 | 194 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002269648.1 | 0 | 1 | 195 | 172 | 364 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 1 | 195 | 203 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 1 | 195 | 203 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 1 | 194 | 203 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 1 | 194 | 203 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.0000000005 | 2 | 181 | 160 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000005 | 2 | 181 | 160 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000005 | 2 | 181 | 160 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000005 | 2 | 181 | 160 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.0000000005 | 2 | 181 | 160 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CU617665 | 194 | 1 | 194 | 0 |
FD985478 | 195 | 1 | 194 | 0 |
CO115241 | 194 | 1 | 194 | 0 |
CO122284 | 194 | 1 | 194 | 0 |
GR458059 | 195 | 1 | 194 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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