Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g036371m |
Family | GH28 |
Protein Properties | Length: 246 Molecular Weight: 25599 Isoelectric Point: 6.4839 |
Chromosome | Chromosome/Scaffold: 02807 Start: 1507 End: 2475 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 24 | 244 | 0 |
WAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMN DEGVQNVTVIRTVFTGTQNGL |
Full Sequence |
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Protein Sequence Length: 246 Download |
YNVLRFGAKG NGVADSTQAF AKAWAAACAS TESATINVPK GRYLLGYVAF NGDCKSSDIT 60 FRIDGTLVAP ADYCVLGQAD NWLSFEGVSG VSIIGGALDA KGSSLWACKA SGTNCPDGAT 120 LYQLQNIRIN GLLSLNSQMF HIVINGCKDV HIEGVTVIAP GNSPNTDGIH VQLSTNAKIM 180 NCTIKTGDDC IPIGPGTKNL WIERVTCGPA HGISIGSLGK DMNDEGVQNV TVIRTVFTGT 240 QNGLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-47 | 2 | 243 | 244 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-49 | 1 | 244 | 252 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 5.0e-51 | 1 | 243 | 248 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-51 | 36 | 244 | 214 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02155 | PLN02155 | 6.0e-74 | 1 | 244 | 247 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78679.1 | 0 | 1 | 244 | 13 | 258 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002263164.1 | 0 | 1 | 244 | 30 | 275 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 1 | 244 | 30 | 275 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 244 | 32 | 279 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 1 | 244 | 23 | 269 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.000000003 | 26 | 244 | 16 | 230 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000003 | 26 | 244 | 16 | 230 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000003 | 26 | 244 | 16 | 230 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000003 | 26 | 244 | 16 | 230 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.000000003 | 26 | 244 | 16 | 230 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CA927124 | 231 | 4 | 230 | 0 |
CA926727 | 201 | 36 | 232 | 0 |
FC891046 | 248 | 1 | 244 | 0 |
FC892896 | 248 | 1 | 244 | 0 |
FC914491 | 248 | 1 | 244 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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