Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g036907m |
Family | GH28 |
Protein Properties | Length: 210 Molecular Weight: 23286.8 Isoelectric Point: 10.5887 |
Chromosome | Chromosome/Scaffold: 01853 Start: 10158 End: 12131 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 13 | 155 | 7.4e-22 |
LSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGR GSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGIIVL |
Full Sequence |
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Protein Sequence Length: 210 Download |
MSEKMKRKHY TDLSTNVCIE DCYIESGNDL VAVKKGWNHY GIAMARPSSN ITMRRVSGTT 60 PTYSGVGIGS EMSGGIFNAR TKIDKGRGGN IENITIRYIK MERVKIPIRI GRGSNSHPDE 120 GRDPKALPKI RGISFVNVVS VNTIKAPVRA GIIVLAPSVK WQSQFVSGFN SQVFPLPCPQ 180 LQNKTRFSWV TSYPFNSCLQ NFPNFLRET* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 0.0006 | 14 | 126 | 119 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-12 | 14 | 151 | 154 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 12 | 203 | 258 | 478 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 12 | 205 | 269 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 12 | 205 | 269 | 483 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 12 | 200 | 227 | 443 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 12 | 191 | 270 | 478 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.00005 | 17 | 94 | 249 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.00005 | 17 | 94 | 249 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.00005 | 17 | 94 | 249 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.00005 | 17 | 94 | 249 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY839986 | 183 | 12 | 165 | 0 |
DT523490 | 218 | 12 | 200 | 0 |
CO117095 | 201 | 12 | 183 | 0 |
EE877478 | 194 | 12 | 176 | 0 |
HO798662 | 201 | 12 | 183 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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