Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g037377m |
Family | GH28 |
Protein Properties | Length: 388 Molecular Weight: 41772.9 Isoelectric Point: 10.1689 |
Chromosome | Chromosome/Scaffold: 00180 Start: 210351 End: 211900 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 374 | 0 |
ASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFN WANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDF NEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTN PCRGIRLHDIKLTYMNRAATSSCKNIG |
Full Sequence |
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Protein Sequence Length: 388 Download |
MAIKLIIFLL FVIIFIKSSN AANYNVITYG AKPDGRTDST KPFLKAWASA CRSAKASTIY 60 VPKGRYLIKA AEFRGPCRNR VTLQIDGTIV APTNYWALGN SGYWILFIKI DRLSVIGGTF 120 DGKGAGFWAC RKSGKNCPAG ASSITFNWAN NILISGLTSI NSQQTHLVIN SCNNVNVRNV 180 KVVAPDQSPN TDGIHVQAST GVTITGVTLK TGDDCISIGP GTRNLFMNNI KCGPGHGVSI 240 GSLGKDFNED GVQNITLLNA VFTGSDNGVR IKSWARPSNS FVRNVLFQNL IMNNVQNPII 300 VDQNYCPNNQ GCPRQSSGVK ISQVTYRNIK GTSKTPEAVT FDCSPTNPCR GIRLHDIKLT 360 YMNRAATSSC KNIGGTTFGV VMPKSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-84 | 51 | 373 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-85 | 25 | 384 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-94 | 26 | 387 | 370 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-103 | 19 | 386 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-161 | 18 | 387 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 1 | 387 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 387 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 5 | 387 | 11 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 1 | 387 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 1 | 387 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-18 | 57 | 332 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-18 | 57 | 332 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-18 | 57 | 332 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-18 | 57 | 332 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-18 | 57 | 332 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |