Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g037736m |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 39263.4 Isoelectric Point: 4.7792 |
Chromosome | Chromosome/Scaffold: 00051 Start: 368024 End: 371749 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 44 | 361 | 0 |
CSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGI TIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHV RNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKAITFDCSEEGCFGIKMEQVSIT SSVPGKETTAYCQNAHGT |
Full Sequence |
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Protein Sequence Length: 378 Download |
MANEVVLVGI GDGRNTFNVV DFGAIGDGKT DDSDAFAKAW TDFCSATGDS ATLEIPANKA 60 FLLKSTTFRG PCKSNSVNIQ VSGTIVAPDS KSWKQCGSQC WLSLYDVQGL SIDGSGTIDG 120 NGRGWWNQAV YFHNCNNLQV KGITIVNSPK SHISINTCNG VSVSNIHIDS PEDSPNTDGI 180 DISFSTQVNI LDSSIKSGDD CVAINGGSSN INITGVACGP GHGISVGSLG LDGADDKVEE 240 VHVRNCNFTG TQNGARIKTS PGGSGYARRI SFEHITLIAS KNPIIIDQHY CVGGGGCKGT 300 SAVNVSEVTY SDVQGSSADE KAITFDCSEE GCFGIKMEQV SITSSVPGKE TTAYCQNAHG 360 TSTSTSPHVG CLTGTVF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-80 | 46 | 359 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-86 | 16 | 359 | 362 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-96 | 17 | 363 | 365 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-104 | 15 | 372 | 371 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-124 | 9 | 365 | 361 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA20037.1 | 0 | 9 | 372 | 7 | 368 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002266797.1 | 0 | 12 | 372 | 12 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309621.1 | 0 | 17 | 349 | 3 | 342 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324855.1 | 0 | 9 | 373 | 19 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 17 | 375 | 28 | 395 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-26 | 117 | 357 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-26 | 117 | 357 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-26 | 117 | 357 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-26 | 117 | 357 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-26 | 117 | 357 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EL454770 | 272 | 16 | 270 | 0 |
CX192293 | 242 | 55 | 290 | 0 |
CV536748 | 258 | 83 | 327 | 0 |
DY961682 | 261 | 17 | 259 | 0 |
EY474520 | 246 | 129 | 373 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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