Basic Information | |
---|---|
Species | Citrus sinensis |
Cazyme ID | orange1.1g037887m |
Family | PL4 |
Protein Properties | Length: 595 Molecular Weight: 67501.1 Isoelectric Point: 6.598 |
Chromosome | Chromosome/Scaffold: 00004 Start: 2580624 End: 2583901 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 8 | 575 | 0 |
VQLINQDKHVVMDNGILQVTLSNPQGHVTGIQYNGIENLLEVNNRESNRGIEATNFTVIEQNEEQVELSFTRTWDSSLEGKVVPLKIDKRFVMRSGPSGF YTYAIFEHLQGWPAIGIGNIRMAFKLNKDKLHYMAIADNRKRFMPLPDDRLSNRSQVLAFPEAVLLVNPIEPQFRGEVDDKYQYSSESKDIRVHGWICRN PATGLWQITPSNEFRSAGPVKQYITSHVGPTSLNFFGPIFVYLNSLSHGGDFQKLWEDANKQMMTEVQGWPPNFLASKDFPKSDQRGNVSGRIVVHDRYV NDKSIPAKGAYVGLAPPGDVGSWQIECKSYQFWTSANEDGYFSFNNIRPGNYNLYAFVPGFIGDYKYDNVIAISPGSQANLDDLVYEPPRDGPTIWEIGI PDRSAAEFFVPDPNPKYINKLYVNHPDRFRQYGLWERYAELYPDEDLVYSVGVSDYRKDWFFAQVTRKKDNNTYRGTTWQIKFKIDNLDENGTYKLRLAL ATANVAQLRVGVNEPSKNPPLFSTGIIGKDNTIARHGIHGLYYLYNVSVPGSLLLKGNNTIFLTQTES |
Full Sequence |
---|
Protein Sequence Length: 595 Download |
WLVSSLGVQL INQDKHVVMD NGILQVTLSN PQGHVTGIQY NGIENLLEVN NRESNRGIEA 60 TNFTVIEQNE EQVELSFTRT WDSSLEGKVV PLKIDKRFVM RSGPSGFYTY AIFEHLQGWP 120 AIGIGNIRMA FKLNKDKLHY MAIADNRKRF MPLPDDRLSN RSQVLAFPEA VLLVNPIEPQ 180 FRGEVDDKYQ YSSESKDIRV HGWICRNPAT GLWQITPSNE FRSAGPVKQY ITSHVGPTSL 240 NFFGPIFVYL NSLSHGGDFQ KLWEDANKQM MTEVQGWPPN FLASKDFPKS DQRGNVSGRI 300 VVHDRYVNDK SIPAKGAYVG LAPPGDVGSW QIECKSYQFW TSANEDGYFS FNNIRPGNYN 360 LYAFVPGFIG DYKYDNVIAI SPGSQANLDD LVYEPPRDGP TIWEIGIPDR SAAEFFVPDP 420 NPKYINKLYV NHPDRFRQYG LWERYAELYP DEDLVYSVGV SDYRKDWFFA QVTRKKDNNT 480 YRGTTWQIKF KIDNLDENGT YKLRLALATA NVAQLRVGVN EPSKNPPLFS TGIIGKDNTI 540 ARHGIHGLYY LYNVSVPGSL LLKGNNTIFL TQTESISPFQ GIMYDYIRLE GPPT* 600 |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam13620 | CarboxypepD_reg | 0.001 | 341 | 389 | 49 | + Carboxypeptidase regulatory-like domain. |
cd10316 | RGL4_M | 2.0e-29 | 292 | 391 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 2.0e-46 | 10 | 252 | 283 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 2.0e-51 | 403 | 590 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 7.0e-84 | 13 | 185 | 190 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 3 | 594 | 1 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 19 | 594 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 19 | 591 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 7 | 594 | 5 | 635 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 3 | 594 | 1 | 636 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.008 | 220 | 570 | 180 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
FY792769 | 269 | 294 | 562 | 0 |
EL409069 | 283 | 303 | 584 | 0 |
GE636266 | 255 | 264 | 515 | 0 |
FF401051 | 261 | 304 | 564 | 0 |
EE874593 | 250 | 314 | 563 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|