Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g038330m |
Family | GH28 |
Protein Properties | Length: 224 Molecular Weight: 23985.6 Isoelectric Point: 4.2825 |
Chromosome | Chromosome/Scaffold: 11224 Start: 1171 End: 1842 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 1 | 187 | 3.3e-33 |
SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISD AELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIHGS |
Full Sequence |
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Protein Sequence Length: 224 Download |
SSDNVCIEDC IIAMGHDAIS LKSGWDEYGI AYGRPTTDVH IRRVLLQSSS GSSVAFGSEM 60 SGGISNVQVE KIHLYDSLNG IEFRTTKGRG GYIKQIVISD AELYNINVAF GACGNCGSHP 120 DDDFDPDALP AIDQITFKDI IGTNITIAGN FTGIQEAPFA NICLSNISLL INPGSYNSWE 180 CSNIHGSSES VFPEPCPELE NSSSNSSSTC FSLIRYYGRA SFL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 7.0e-6 | 1 | 193 | 201 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 7.0e-10 | 1 | 111 | 111 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 1 | 197 | 232 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 197 | 234 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 1 | 205 | 232 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 221 | 234 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 1 | 223 | 232 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.000000006 | 5 | 166 | 249 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.000000006 | 5 | 166 | 249 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.000000006 | 5 | 166 | 249 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.000000006 | 5 | 166 | 249 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY868990 | 199 | 1 | 199 | 0 |
CV712714 | 203 | 22 | 224 | 0 |
CX288835 | 174 | 1 | 174 | 0 |
CU494711 | 200 | 1 | 200 | 0 |
CV712714 | 30 | 1 | 30 | 0.00000005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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