Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g038535m |
Family | GH28 |
Protein Properties | Length: 225 Molecular Weight: 24762.4 Isoelectric Point: 9.336 |
Chromosome | Chromosome/Scaffold: 01772 Start: 2416 End: 3536 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 5 | 144 | 1.1e-24 |
LWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIA VRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQG |
Full Sequence |
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Protein Sequence Length: 225 Download |
MRWDLWWNST LKHTRGHLVE LMNSSNILII SNLTFCNSPS RTIHPVYCRN GFVKGMTVLS 60 PLSAPNTDGL DPDCYIESGN GLVAVKSGWD HDGIAMARPS SNIAVRRVSG TTPTCSGVGI 120 GREMSGRIFN VTVNHLDVWM QQQGSYKDRL RLYGHPKEGW DPKAIPKISG ISFVNVVSVN 180 TTKAPVLAGI IGTQFEEICM KNVSLLVQAP SVKWQCRFVS GFNGQ |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 0.0002 | 22 | 184 | 179 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-5 | 6 | 88 | 92 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 4.0e-10 | 12 | 138 | 138 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 1 | 222 | 187 | 444 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 222 | 198 | 455 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 222 | 198 | 455 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307030.1 | 0 | 1 | 222 | 122 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310517.1 | 0 | 1 | 222 | 156 | 413 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.000000000004 | 13 | 186 | 187 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.000000000004 | 13 | 186 | 187 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.000000000004 | 13 | 186 | 187 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.000000000004 | 13 | 186 | 187 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000009 | 3 | 203 | 135 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY839986 | 250 | 10 | 222 | 0 |
CO117095 | 256 | 3 | 221 | 0 |
HO798662 | 259 | 1 | 222 | 0 |
EE877478 | 256 | 3 | 221 | 0 |
EL349705 | 259 | 1 | 222 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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