Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g039868m |
Family | GH28 |
Protein Properties | Length: 347 Molecular Weight: 36732.8 Isoelectric Point: 5.0763 |
Chromosome | Chromosome/Scaffold: 00396 Start: 41950 End: 44991 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 44 | 127 | 3.3e-21 |
GDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFVNVNGFTVNGNGEIDGQGSQWWK | |||
GH28 | 129 | 335 | 0 |
CSDDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEEVHVKNCTLNATQNGLR IKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEHIHIASSNSKEGTYSTC INAHGKC |
Full Sequence |
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Protein Sequence Length: 347 Download |
MATLGWSRSY PGAMPYNVMN FGAVGNGVTD DSQAFIKAWN AVCGDTSNNP TLQVPQGKTF 60 LLQPTSFQGP CKSSNLQVQI EGNLIAPEGP SSWKGKDRRS WLYFVNVNGF TVNGNGEIDG 120 QGSQWWKLCS DDATLSNLHI SAPESSPNTD GIDISASQNI HILNSNIATG DDCIAINTGS 180 SQINVTGLTC GPGHGISIGS LGKQGEAAAV EEVHVKNCTL NATQNGLRIK TWQGGSGYAR 240 KITFNDITLT DVDNPIIIDQ FYCPHEQCSN ETNAVKISDV SYTGIHGTSI TQDAIALNCS 300 RTVGCDNIVL EHIHIASSNS KEGTYSTCIN AHGKCDDSVP SVGCLK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-77 | 43 | 335 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-80 | 10 | 334 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-95 | 18 | 345 | 372 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-99 | 17 | 346 | 369 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-106 | 16 | 346 | 359 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 16 | 345 | 124 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.0000000003 | 273 | 342 | 22 | 90 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 1 | 346 | 13 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 1 | 346 | 1 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 16 | 345 | 18 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-20 | 51 | 288 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 51 | 288 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-20 | 51 | 288 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-20 | 51 | 288 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-20 | 51 | 288 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CA785641 | 182 | 135 | 315 | 0 |
FN025824 | 206 | 142 | 346 | 0 |
GT141262 | 211 | 135 | 345 | 0 |
GO013888 | 206 | 139 | 344 | 0 |
DR923379 | 216 | 133 | 347 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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